Wall clock time and date at job start Mon Mar 30 2020 03:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47908 * 110.99901 * 2 1 4 4 C 1.54599 * 102.63796 * 94.57174 * 3 2 1 5 5 C 1.51579 * 102.82483 * 25.56498 * 4 3 2 6 6 C 1.39008 * 107.94710 * 343.96141 * 5 4 3 7 7 C 1.39358 * 119.08526 * 179.59119 * 6 5 4 8 8 C 1.37955 * 120.19819 * 0.13892 * 7 6 5 9 9 C 1.38256 * 120.26582 * 0.04751 * 8 7 6 10 10 C 1.37872 * 131.56475 * 163.79747 * 5 4 3 11 11 C 1.50707 * 119.96150 * 0.42791 * 10 5 4 12 12 H 1.08993 * 109.46862 * 39.99628 * 11 10 5 13 13 N 1.46898 * 109.46896 * 159.99912 * 11 10 5 14 14 C 1.50702 * 109.46936 * 279.99854 * 11 10 5 15 15 H 1.07999 * 120.00286 * 359.97438 * 14 11 10 16 16 C 1.37876 * 119.99725 * 180.02562 * 14 11 10 17 17 N 1.31510 * 120.00046 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99962 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.47067 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47427 * 119.99309 * 18 16 14 21 21 H 1.48498 * 109.47047 * 239.99705 * 18 16 14 22 22 H 1.08995 * 109.47311 * 300.01164 * 1 2 3 23 23 H 1.09008 * 109.46698 * 60.01197 * 1 2 3 24 24 H 1.08993 * 109.46852 * 180.02562 * 1 2 3 25 25 H 1.08999 * 110.77814 * 212.85986 * 3 2 1 26 26 H 1.09004 * 110.77649 * 336.28650 * 3 2 1 27 27 H 1.08996 * 110.73801 * 143.89564 * 4 3 2 28 28 H 1.08995 * 110.74200 * 267.04836 * 4 3 2 29 29 H 1.07995 * 119.90288 * 180.11762 * 7 6 5 30 30 H 1.08007 * 119.86806 * 179.76874 * 8 7 6 31 31 H 1.08007 * 120.05674 * 179.87205 * 9 8 7 32 32 H 1.00894 * 111.00294 * 60.00367 * 13 11 10 33 33 H 1.00907 * 110.99408 * 183.95414 * 13 11 10 34 34 H 0.97005 * 120.00018 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 2.2325 1.6535 1.5037 5 6 2.4324 0.2622 2.0709 6 6 1.9708 -0.6534 1.1323 7 6 2.0536 -2.0152 1.4166 8 6 2.5845 -2.4426 2.6161 9 6 3.0372 -1.5237 3.5446 10 6 2.9597 -0.1701 3.2692 11 6 3.4515 0.8331 4.2807 12 1 2.7691 1.6824 4.3114 13 7 3.5096 0.2033 5.6066 14 6 4.8272 1.3079 3.8893 15 1 5.2984 0.9216 2.9976 16 6 5.4845 2.2347 4.6702 17 7 4.9109 2.7047 5.7563 18 14 7.1894 2.8239 4.1847 19 1 7.6084 2.1477 2.9307 20 1 7.1631 4.2930 3.9703 21 1 8.1524 2.4988 5.2674 22 1 -0.3634 0.5140 0.8898 23 1 -0.3633 0.5137 -0.8902 24 1 -0.3633 -1.0276 0.0005 25 1 2.9368 1.4351 -0.5529 26 1 1.2665 2.0762 -0.4099 27 1 3.1243 2.2625 1.6516 28 1 1.3610 2.1334 1.9489 29 1 1.7007 -2.7380 0.6961 30 1 2.6427 -3.4991 2.8325 31 1 3.4504 -1.8620 4.4834 32 1 4.1363 -0.5874 5.6041 33 1 3.7749 0.8727 6.3135 34 1 5.3736 3.3566 6.3059 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261269029.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:50 Heat of formation + Delta-G solvation = 18.131851 kcal Electronic energy + Delta-G solvation = -16343.425181 eV Core-core repulsion = 13854.069188 eV Total energy + Delta-G solvation = -2489.355993 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.62116 -38.22363 -36.22024 -33.68368 -32.66253 -30.20137 -29.80592 -27.94516 -26.64273 -24.73585 -23.11136 -22.03515 -20.55196 -18.61493 -17.64774 -17.03717 -16.63185 -16.28911 -16.05037 -15.65953 -14.88828 -14.75704 -14.19903 -13.93870 -13.75928 -13.52596 -13.17534 -13.04072 -12.87777 -12.80512 -12.75638 -12.38604 -12.12802 -11.94361 -11.89754 -11.25021 -10.76005 -10.25312 -9.45231 -9.17234 -8.76131 -8.14106 -6.39962 0.54171 0.66416 1.32483 1.36117 1.47159 2.33632 2.79108 2.97798 3.02295 3.80702 3.97238 4.12266 4.21493 4.32064 4.37617 4.52140 4.60105 4.68051 4.74397 4.78941 4.84567 4.93511 4.98313 5.11915 5.30858 5.39324 5.56277 5.59589 5.70106 5.85555 5.96341 6.06695 6.10934 6.45748 6.62474 6.90421 7.08499 7.35992 8.79986 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028512 B = 0.008569 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.797974 B = 3266.964278 C = 3747.660478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.499 5.499 3 C 0.057 3.943 4 C -0.106 4.106 5 C -0.160 4.160 6 C 0.071 3.929 7 C -0.133 4.133 8 C -0.104 4.104 9 C -0.139 4.139 10 C -0.035 4.035 11 C 0.249 3.751 12 H 0.007 0.993 13 N -0.843 5.843 14 C -0.548 4.548 15 H 0.040 0.960 16 C 0.023 3.977 17 N -0.916 5.916 18 Si 0.957 3.043 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.276 1.276 22 H 0.021 0.979 23 H 0.097 0.903 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.142 0.858 30 H 0.153 0.847 31 H 0.125 0.875 32 H 0.319 0.681 33 H 0.345 0.655 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.314 -5.567 -9.314 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.216 5.216 3 C -0.070 4.070 4 C -0.144 4.144 5 C -0.163 4.163 6 C -0.024 4.024 7 C -0.153 4.153 8 C -0.122 4.122 9 C -0.158 4.158 10 C -0.036 4.036 11 C 0.138 3.862 12 H 0.025 0.975 13 N -0.372 5.372 14 C -0.587 4.587 15 H 0.059 0.941 16 C -0.177 4.177 17 N -0.555 5.555 18 Si 0.782 3.218 19 H -0.199 1.199 20 H -0.204 1.204 21 H -0.202 1.202 22 H 0.040 0.960 23 H 0.115 0.885 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.128 0.872 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.160 0.840 30 H 0.171 0.829 31 H 0.142 0.858 32 H 0.130 0.870 33 H 0.159 0.841 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.983 -5.812 -9.783 13.351 hybrid contribution 1.867 1.426 0.924 2.524 sum -5.116 -4.387 -8.859 11.131 Atomic orbital electron populations 1.22548 0.84479 1.03238 1.01566 1.60358 1.09540 1.14894 1.36845 1.23202 1.01786 0.88086 0.93943 1.21560 1.01811 0.94249 0.96815 1.20936 1.04092 0.96495 0.94797 1.19746 0.99122 0.94013 0.89534 1.20586 1.03791 0.92626 0.98274 1.21181 0.97891 1.00305 0.92851 1.21058 1.02281 0.92071 1.00362 1.19778 0.94374 0.95353 0.94065 1.17681 0.93048 0.89619 0.85823 0.97517 1.59522 1.56864 1.12991 1.07806 1.21902 1.02490 1.24743 1.09606 0.94129 1.25709 1.01472 0.95551 0.94963 1.69845 1.39133 1.31164 1.15391 0.85532 0.79961 0.78047 0.78240 1.19919 1.20361 1.20178 0.95986 0.88476 0.90408 0.89621 0.87165 0.91362 0.91166 0.84034 0.82897 0.85755 0.87037 0.84096 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 9.29 127.69 1.19 1.82 16 2 N -0.50 -14.93 5.33 -713.42 -3.80 -18.73 16 3 C 0.06 1.63 7.00 86.65 0.61 2.24 16 4 C -0.11 -3.97 6.64 30.67 0.20 -3.77 16 5 C -0.16 -6.68 6.05 -19.49 -0.12 -6.80 16 6 C 0.07 2.54 5.59 38.29 0.21 2.75 16 7 C -0.13 -4.23 10.07 22.47 0.23 -4.00 16 8 C -0.10 -3.35 10.02 22.21 0.22 -3.13 16 9 C -0.14 -5.52 9.26 22.30 0.21 -5.31 16 10 C -0.03 -1.58 5.02 -19.92 -0.10 -1.68 16 11 C 0.25 12.94 2.75 43.43 0.12 13.06 16 12 H 0.01 0.41 8.06 -2.39 -0.02 0.39 16 13 N -0.84 -41.46 8.66 -174.95 -1.52 -42.98 16 14 C -0.55 -30.22 8.70 25.60 0.22 -30.00 16 15 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 16 C 0.02 1.26 5.38 84.65 0.46 1.71 16 17 N -0.92 -51.11 11.54 21.45 0.25 -50.87 16 18 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H 0.02 0.55 8.14 -2.39 -0.02 0.54 16 23 H 0.10 1.72 8.11 -2.38 -0.02 1.70 16 24 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.11 2.43 7.76 -2.38 -0.02 2.41 16 27 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 28 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 30 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 31 H 0.12 4.79 6.25 -2.91 -0.02 4.77 16 32 H 0.32 14.75 7.28 -89.70 -0.65 14.10 16 33 H 0.34 18.13 7.08 -89.69 -0.63 17.50 16 34 H 0.27 14.15 8.31 -92.70 -0.77 13.38 16 Total: -1.00 -61.54 279.56 0.22 -61.31 By element: Atomic # 1 Polarization: 39.13 SS G_CDS: -0.18 Total: 38.95 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 3.45 Total: -33.10 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -5.07 Total: -112.57 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -61.54 0.22 -61.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269029.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.445 kcal (2) G-P(sol) polarization free energy of solvation -61.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds