Wall clock time and date at job start Mon Mar 30 2020 03:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29716 * 1 3 3 Si 1.86797 * 119.99835 * 2 1 4 4 H 1.48502 * 109.46957 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47313 * 300.00363 * 3 2 1 6 6 H 1.48504 * 109.46986 * 60.00391 * 3 2 1 7 7 C 1.46267 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00122 * 188.72452 * 7 2 1 9 9 C 1.38211 * 119.99681 * 8.71918 * 7 2 1 10 10 C 1.41027 * 120.06701 * 34.88222 * 9 7 2 11 11 C 1.38079 * 119.74802 * 179.97438 * 10 9 7 12 12 C 1.38811 * 119.95849 * 0.12635 * 11 10 9 13 13 C 1.40343 * 120.09793 * 359.91484 * 12 11 10 14 14 N 1.32892 * 132.00664 * 180.02562 * 13 12 11 15 15 C 1.32460 * 109.24815 * 179.97438 * 14 13 12 16 16 C 1.36494 * 108.55046 * 0.02562 * 15 14 13 17 17 N 1.48024 * 126.45993 * 179.97438 * 16 15 14 18 18 O 1.31705 * 120.00308 * 39.99954 * 17 16 15 19 19 O 1.31703 * 120.00329 * 220.00264 * 17 16 15 20 20 N 1.35896 * 107.07696 * 359.97438 * 16 15 14 21 21 H 0.96998 * 120.00087 * 359.97438 * 1 2 3 22 22 H 1.08009 * 120.12459 * 0.03989 * 10 9 7 23 23 H 1.08002 * 120.02479 * 180.02562 * 11 10 9 24 24 H 1.07999 * 119.95380 * 180.19524 * 12 11 10 25 25 H 1.07994 * 125.72583 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2972 0.0000 0.0000 3 14 2.2311 1.6177 0.0000 4 1 3.6911 1.3464 -0.0006 5 1 1.8723 2.3965 -1.2124 6 1 1.8724 2.3964 1.2126 7 6 2.0285 -1.2667 -0.0006 8 1 3.0991 -1.2721 0.1413 9 6 1.3494 -2.4566 -0.1826 10 6 0.2318 -2.5082 -1.0411 11 6 -0.4414 -3.7006 -1.2185 12 6 -0.0184 -4.8415 -0.5505 13 6 1.0937 -4.7853 0.3036 14 7 1.6930 -5.7109 1.0454 15 6 2.7160 -5.1634 1.6843 16 6 2.7820 -3.8424 1.3470 17 7 3.7748 -2.8586 1.8345 18 8 5.0372 -3.2087 1.9700 19 8 3.3958 -1.6330 2.1328 20 7 1.7644 -3.6008 0.4794 21 1 -0.4850 0.8400 0.0004 22 1 -0.0955 -1.6185 -1.5588 23 1 -1.2976 -3.7452 -1.8754 24 1 -0.5432 -5.7748 -0.6918 25 1 3.3856 -5.6761 2.3589 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261272393.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:21 Heat of formation + Delta-G solvation = 103.404312 kcal Electronic energy + Delta-G solvation = -16029.226625 eV Core-core repulsion = 13206.476222 eV Total energy + Delta-G solvation = -2822.750402 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.01710 -37.62575 -36.65051 -34.12447 -33.40524 -32.67948 -29.67290 -29.11348 -26.43699 -24.66977 -22.65626 -21.65604 -20.66146 -18.35767 -17.65774 -17.05483 -16.19146 -15.68827 -15.39971 -15.17882 -14.42587 -14.13829 -13.54471 -13.13711 -12.41992 -12.13352 -11.78787 -11.17049 -11.09911 -10.75279 -10.62667 -10.37965 -10.25850 -10.15231 -9.81528 -9.72255 -9.52323 -8.22507 -7.69278 -7.30479 -5.15429 0.42603 1.77740 1.90338 2.21636 2.70690 2.75720 2.84465 3.36114 3.43209 3.58551 3.96468 4.66564 4.87707 5.34644 5.63611 5.95844 6.05708 6.14439 6.26242 6.34558 6.61523 6.89905 7.09192 7.26801 7.34041 7.41394 7.64638 7.79280 7.82755 8.05830 8.42598 9.22405 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.022778 B = 0.013592 C = 0.008834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.942014 B = 2059.600272 C = 3168.782778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.081 3.919 3 Si 0.941 3.059 4 H -0.246 1.246 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.104 0.896 9 C 0.256 3.744 10 C -0.215 4.215 11 C -0.031 4.031 12 C -0.261 4.261 13 C 0.311 3.689 14 N -0.526 5.526 15 C 0.147 3.853 16 C -0.030 4.030 17 N 0.033 4.967 18 O -0.252 6.252 19 O -0.173 6.173 20 N -0.383 5.383 21 H 0.305 0.695 22 H 0.142 0.858 23 H 0.119 0.881 24 H 0.130 0.870 25 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.591 1.080 -2.201 2.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.151 4.151 3 Si 0.761 3.239 4 H -0.168 1.168 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.419 4.419 8 H 0.122 0.878 9 C 0.153 3.847 10 C -0.237 4.237 11 C -0.054 4.054 12 C -0.285 4.285 13 C 0.080 3.920 14 N -0.249 5.249 15 C -0.020 4.020 16 C -0.230 4.230 17 N 0.489 4.511 18 O -0.416 6.416 19 O -0.362 6.362 20 N -0.061 5.061 21 H 0.117 0.883 22 H 0.159 0.841 23 H 0.137 0.863 24 H 0.147 0.853 25 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.231 0.015 -2.276 3.187 hybrid contribution 0.773 1.795 0.245 1.970 sum -1.458 1.810 -2.031 3.087 Atomic orbital electron populations 1.69145 1.08907 1.32455 1.23966 1.27464 0.94821 1.02411 0.90452 0.85667 0.81697 0.77129 0.79390 1.16812 1.18790 1.18370 1.20734 0.96919 0.88662 1.35586 0.87817 1.18143 0.93252 0.82473 0.90791 1.21058 0.99792 0.98576 1.04252 1.20894 0.96745 0.92008 0.95786 1.19702 1.00709 1.00152 1.07975 1.20660 0.94399 0.79754 0.97177 1.70732 1.10776 1.28954 1.14445 1.22344 0.95795 0.86509 0.97375 1.20116 0.97871 0.89909 1.15134 1.48882 1.01405 1.01685 0.99089 1.96186 0.95046 1.85334 1.65041 1.96238 1.86013 1.00902 1.53015 1.42778 1.21554 1.11962 1.29820 0.88254 0.84053 0.86296 0.85260 0.79738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -15.30 11.26 55.97 0.63 -14.67 15 2 C 0.08 1.73 5.39 -15.22 -0.08 1.65 15 3 Si 0.94 16.57 29.65 -169.99 -5.04 11.53 15 4 H -0.25 -4.56 7.11 56.52 0.40 -4.16 15 5 H -0.26 -4.29 7.11 56.52 0.40 -3.89 15 6 H -0.26 -4.50 7.11 56.52 0.40 -4.09 15 7 C -0.39 -9.41 6.98 -36.37 -0.25 -9.67 15 8 H 0.10 2.65 5.83 -52.49 -0.31 2.34 15 9 C 0.26 6.26 6.39 -83.78 -0.54 5.72 15 10 C -0.22 -4.72 8.66 -38.58 -0.33 -5.05 15 11 C -0.03 -0.61 10.07 -39.43 -0.40 -1.01 15 12 C -0.26 -5.37 10.15 -38.58 -0.39 -5.76 15 13 C 0.31 7.24 7.78 -155.82 -1.21 6.02 15 14 N -0.53 -11.79 11.28 -12.73 -0.14 -11.94 15 15 C 0.15 3.15 11.83 -17.91 -0.21 2.93 15 16 C -0.03 -0.73 7.73 -143.37 -1.11 -1.84 15 17 N 0.03 0.83 4.47 33.24 0.15 0.98 15 18 O -0.25 -6.13 19.95 -31.57 -0.63 -6.76 15 19 O -0.17 -4.45 16.23 -31.57 -0.51 -4.96 15 20 N -0.38 -9.48 2.98 -56.79 -0.17 -9.65 15 21 H 0.30 5.54 8.27 -40.82 -0.34 5.21 15 22 H 0.14 3.00 6.62 -52.48 -0.35 2.65 15 23 H 0.12 1.87 8.06 -52.49 -0.42 1.44 15 24 H 0.13 2.33 8.06 -52.49 -0.42 1.91 15 25 H 0.19 3.18 8.06 -52.49 -0.42 2.76 15 LS Contribution 237.01 15.07 3.57 3.57 Total: -1.00 -27.00 237.01 -7.73 -34.72 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -1.05 Total: 4.17 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -4.53 Total: -7.00 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.47 Total: -35.28 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -1.14 Total: -11.72 kcal Atomic # 14 Polarization: 16.57 SS G_CDS: -5.04 Total: 11.53 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -27.00 -7.73 -34.72 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272393.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.127 kcal (2) G-P(sol) polarization free energy of solvation -26.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds