Wall clock time and date at job start Mon Mar 30 2020 03:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29716 * 1 3 3 Si 1.86797 * 119.99835 * 2 1 4 4 H 1.48502 * 109.46957 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47313 * 300.00363 * 3 2 1 6 6 H 1.48504 * 109.46986 * 60.00391 * 3 2 1 7 7 C 1.46267 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00122 * 188.72452 * 7 2 1 9 9 C 1.38211 * 119.99681 * 8.71918 * 7 2 1 10 10 C 1.41027 * 120.06701 * 34.88222 * 9 7 2 11 11 C 1.38079 * 119.74802 * 179.97438 * 10 9 7 12 12 C 1.38811 * 119.95849 * 0.12635 * 11 10 9 13 13 C 1.40343 * 120.09793 * 359.91484 * 12 11 10 14 14 N 1.32892 * 132.00664 * 180.02562 * 13 12 11 15 15 C 1.32460 * 109.24815 * 179.97438 * 14 13 12 16 16 C 1.36494 * 108.55046 * 0.02562 * 15 14 13 17 17 N 1.48024 * 126.45993 * 179.97438 * 16 15 14 18 18 O 1.31705 * 120.00308 * 39.99954 * 17 16 15 19 19 O 1.31703 * 120.00329 * 220.00264 * 17 16 15 20 20 N 1.35896 * 107.07696 * 359.97438 * 16 15 14 21 21 H 0.96998 * 120.00087 * 359.97438 * 1 2 3 22 22 H 1.08009 * 120.12459 * 0.03989 * 10 9 7 23 23 H 1.08002 * 120.02479 * 180.02562 * 11 10 9 24 24 H 1.07999 * 119.95380 * 180.19524 * 12 11 10 25 25 H 1.07994 * 125.72583 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2972 0.0000 0.0000 3 14 2.2311 1.6177 0.0000 4 1 3.6911 1.3464 -0.0006 5 1 1.8723 2.3965 -1.2124 6 1 1.8724 2.3964 1.2126 7 6 2.0285 -1.2667 -0.0006 8 1 3.0991 -1.2721 0.1413 9 6 1.3494 -2.4566 -0.1826 10 6 0.2318 -2.5082 -1.0411 11 6 -0.4414 -3.7006 -1.2185 12 6 -0.0184 -4.8415 -0.5505 13 6 1.0937 -4.7853 0.3036 14 7 1.6930 -5.7109 1.0454 15 6 2.7160 -5.1634 1.6843 16 6 2.7820 -3.8424 1.3470 17 7 3.7748 -2.8586 1.8345 18 8 5.0372 -3.2087 1.9700 19 8 3.3958 -1.6330 2.1328 20 7 1.7644 -3.6008 0.4794 21 1 -0.4850 0.8400 0.0004 22 1 -0.0955 -1.6185 -1.5588 23 1 -1.2976 -3.7452 -1.8754 24 1 -0.5432 -5.7748 -0.6918 25 1 3.3856 -5.6761 2.3589 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261272393.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:21 Heat of formation + Delta-G solvation = 89.633952 kcal Electronic energy + Delta-G solvation = -16029.823752 eV Core-core repulsion = 13206.476222 eV Total energy + Delta-G solvation = -2823.347530 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.75596 -39.44440 -38.36259 -35.78545 -35.23716 -34.40468 -31.40856 -30.86574 -28.19457 -26.43728 -24.35935 -23.36656 -22.41371 -20.11346 -19.39819 -18.88452 -17.91874 -17.40896 -17.03035 -16.92850 -16.14214 -15.80769 -15.12607 -14.79214 -14.02941 -13.84703 -13.32145 -12.77848 -12.70176 -12.44852 -12.24074 -12.20192 -12.02015 -11.85386 -11.57094 -11.41277 -11.30191 -9.96359 -9.31499 -9.03820 -6.90294 -1.46162 0.09039 0.15482 0.45395 1.26061 1.28612 1.42937 1.67776 1.78814 2.08100 2.30698 2.94651 3.21641 3.68613 4.00488 4.26558 4.42522 4.52965 4.60138 4.65141 4.94333 5.20875 5.36818 5.56113 5.61490 5.71397 5.92737 5.98517 6.10751 6.29774 6.66218 7.66027 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.022778 B = 0.013592 C = 0.008834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.942014 B = 2059.600272 C = 3168.782778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.055 3.945 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.233 1.233 6 H -0.253 1.253 7 C -0.410 4.410 8 H 0.078 0.922 9 C 0.225 3.775 10 C -0.213 4.213 11 C -0.023 4.023 12 C -0.242 4.242 13 C 0.279 3.721 14 N -0.524 5.524 15 C 0.166 3.834 16 C -0.059 4.059 17 N 0.038 4.962 18 O -0.266 6.266 19 O -0.227 6.227 20 N -0.401 5.401 21 H 0.321 0.679 22 H 0.147 0.853 23 H 0.168 0.832 24 H 0.162 0.838 25 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.487 0.628 -3.352 4.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.176 4.176 3 Si 0.812 3.188 4 H -0.195 1.195 5 H -0.156 1.156 6 H -0.177 1.177 7 C -0.441 4.441 8 H 0.096 0.904 9 C 0.122 3.878 10 C -0.234 4.234 11 C -0.046 4.046 12 C -0.267 4.267 13 C 0.051 3.949 14 N -0.247 5.247 15 C -0.004 4.004 16 C -0.261 4.261 17 N 0.481 4.519 18 O -0.427 6.427 19 O -0.401 6.401 20 N -0.080 5.080 21 H 0.135 0.865 22 H 0.165 0.835 23 H 0.186 0.814 24 H 0.180 0.820 25 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -4.136 -0.361 -3.402 5.367 hybrid contribution 1.142 1.730 0.470 2.126 sum -2.994 1.369 -2.932 4.408 Atomic orbital electron populations 1.69060 1.09330 1.34274 1.23090 1.28073 0.95613 1.03789 0.90102 0.84958 0.78962 0.74122 0.80773 1.19461 1.15570 1.17688 1.20794 0.96204 0.90312 1.36817 0.90358 1.18619 0.94621 0.82752 0.91805 1.21305 0.98993 0.99917 1.03227 1.21388 0.97323 0.90406 0.95469 1.20336 0.98916 1.01794 1.05625 1.21320 0.95413 0.79737 0.98399 1.70769 1.10916 1.28678 1.14336 1.23037 0.95378 0.85492 0.96457 1.20594 0.98440 0.90594 1.16425 1.48904 1.01498 1.01739 0.99805 1.96132 0.95524 1.85267 1.65754 1.96208 1.86191 1.02062 1.55667 1.42942 1.22280 1.12492 1.30252 0.86478 0.83524 0.81445 0.82034 0.75971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -30.30 11.26 23.16 0.26 -30.04 15 2 C 0.05 2.35 5.39 87.09 0.47 2.82 15 3 Si 0.99 33.80 29.65 68.60 2.03 35.83 15 4 H -0.27 -10.21 7.11 99.48 0.71 -9.51 15 5 H -0.23 -6.74 7.11 99.48 0.71 -6.04 15 6 H -0.25 -8.27 7.11 99.48 0.71 -7.56 15 7 C -0.41 -20.44 6.98 24.35 0.17 -20.27 15 8 H 0.08 4.24 5.83 -2.91 -0.02 4.23 15 9 C 0.22 11.04 6.39 38.76 0.25 11.29 15 10 C -0.21 -8.96 8.66 22.92 0.20 -8.76 15 11 C -0.02 -0.82 10.07 22.37 0.23 -0.59 15 12 C -0.24 -9.09 10.15 22.92 0.23 -8.86 15 13 C 0.28 12.50 7.78 133.80 1.04 13.55 15 14 N -0.52 -22.50 11.28 -194.17 -2.19 -24.69 15 15 C 0.17 6.92 11.83 84.19 1.00 7.92 15 16 C -0.06 -2.90 7.73 128.03 0.99 -1.91 15 17 N 0.04 1.97 4.47 -48.74 -0.22 1.76 15 18 O -0.27 -13.43 19.95 3.51 0.07 -13.36 15 19 O -0.23 -12.37 16.23 3.51 0.06 -12.31 15 20 N -0.40 -19.84 2.98 -333.58 -1.00 -20.84 15 21 H 0.32 11.12 8.27 -92.71 -0.77 10.35 15 22 H 0.15 5.95 6.62 -2.91 -0.02 5.93 15 23 H 0.17 4.27 8.06 -2.91 -0.02 4.25 15 24 H 0.16 5.00 8.06 -2.91 -0.02 4.97 15 25 H 0.22 7.22 8.06 -2.91 -0.02 7.19 15 Total: -1.00 -59.50 237.01 4.83 -54.66 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 1.25 Total: 13.82 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 4.57 Total: -4.83 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -3.14 Total: -73.81 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: 0.13 Total: -25.67 kcal Atomic # 14 Polarization: 33.80 SS G_CDS: 2.03 Total: 35.83 kcal Total: -59.50 4.83 -54.66 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272393.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.296 kcal (2) G-P(sol) polarization free energy of solvation -59.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds