Wall clock time and date at job start Mon Mar 30 2020 03:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30587 * 1 3 3 Si 1.86800 * 119.99977 * 2 1 4 4 H 1.48500 * 109.47228 * 274.97888 * 3 2 1 5 5 H 1.48500 * 109.47112 * 34.97998 * 3 2 1 6 6 H 1.48498 * 109.46942 * 154.97974 * 3 2 1 7 7 C 1.40456 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00086 * 186.04298 * 7 2 1 9 9 C 1.39585 * 119.99638 * 6.04780 * 7 2 1 10 10 C 1.39298 * 125.54098 * 174.21522 * 9 7 2 11 11 C 1.40746 * 106.62709 * 179.97438 * 10 9 7 12 12 C 1.40487 * 134.23483 * 179.97438 * 11 10 9 13 13 N 1.31143 * 120.28295 * 179.76523 * 12 11 10 14 14 C 1.33335 * 122.08186 * 0.52169 * 13 12 11 15 15 C 1.47708 * 119.34851 * 179.74449 * 14 13 12 16 16 O 1.21485 * 119.99777 * 179.73250 * 15 14 13 17 17 O 1.34753 * 120.00007 * 359.73511 * 15 14 13 18 18 C 1.39367 * 121.30054 * 359.47325 * 14 13 12 19 19 C 1.38745 * 118.95110 * 0.25178 * 18 14 13 20 20 O 1.34644 * 133.79324 * 179.97438 * 19 18 14 21 21 H 0.97002 * 119.99672 * 0.02562 * 1 2 3 22 22 H 1.07996 * 126.68857 * 359.97438 * 10 9 7 23 23 H 1.07995 * 119.86099 * 0.04188 * 12 11 10 24 24 H 0.96694 * 117.00031 * 180.02562 * 17 15 14 25 25 H 1.08004 * 120.52662 * 180.27452 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 2.3821 2.1072 -1.3948 5 1 1.4939 2.6200 0.8026 6 1 3.5861 1.4120 0.5921 7 6 2.0082 -1.2164 0.0005 8 1 3.0837 -1.2189 0.0990 9 6 1.3160 -2.4219 -0.1263 10 6 1.8988 -3.6806 -0.2538 11 6 0.8424 -4.6054 -0.3525 12 6 0.7719 -6.0011 -0.4967 13 7 -0.3923 -6.6017 -0.5576 14 6 -1.5411 -5.9274 -0.4970 15 6 -2.8184 -6.6648 -0.5770 16 8 -3.8720 -6.0628 -0.5181 17 8 -2.8151 -8.0052 -0.7153 18 6 -1.5603 -4.5412 -0.3540 19 6 -0.3556 -3.8570 -0.2793 20 8 -0.0288 -2.5578 -0.1446 21 1 -0.4850 0.8401 -0.0004 22 1 2.9553 -3.9036 -0.2732 23 1 1.6803 -6.5824 -0.5533 24 1 -3.6755 -8.4437 -0.7636 25 1 -2.4981 -4.0081 -0.3018 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261281977.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:56 Heat of formation + Delta-G solvation = -96.299392 kcal Electronic energy + Delta-G solvation = -15211.758452 eV Core-core repulsion = 12348.055496 eV Total energy + Delta-G solvation = -2863.702956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.99338 -41.15882 -39.25131 -37.04463 -36.01613 -33.69495 -32.41467 -31.40588 -28.30933 -25.20467 -24.40666 -22.52807 -22.04125 -20.11028 -19.49612 -18.45995 -17.47234 -16.92315 -16.81508 -16.49845 -16.46560 -16.09182 -15.34943 -14.69598 -14.18182 -14.09010 -13.78746 -13.35325 -13.07634 -13.02745 -12.54873 -12.34754 -11.95523 -11.84027 -11.59186 -11.03601 -10.63664 -10.24823 -9.31104 -9.10697 -6.80942 -0.42631 0.43359 1.10225 1.36282 1.51945 1.57472 1.85646 1.87925 2.06563 2.55394 2.86167 3.04698 3.56635 3.76572 4.06011 4.36595 4.48975 4.58263 4.77359 4.87104 5.05768 5.21182 5.49613 5.53286 5.63765 5.80048 6.16965 6.24110 6.72805 6.87690 7.18168 7.87889 Molecular weight = 233.05amu Principal moments of inertia in cm(-1) A = 0.053944 B = 0.006165 C = 0.005547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.930468 B = 4540.657522 C = 5046.882453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.016 3.984 3 Si 1.016 2.984 4 H -0.256 1.256 5 H -0.265 1.265 6 H -0.238 1.238 7 C -0.412 4.412 8 H 0.144 0.856 9 C 0.203 3.797 10 C -0.395 4.395 11 C -0.076 4.076 12 C 0.072 3.928 13 N -0.431 5.431 14 C -0.035 4.035 15 C 0.564 3.436 16 O -0.553 6.553 17 O -0.490 6.490 18 C -0.060 4.060 19 C -0.053 4.053 20 O -0.190 6.190 21 H 0.308 0.692 22 H 0.158 0.842 23 H 0.188 0.812 24 H 0.429 0.571 25 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.300 -1.731 -0.409 2.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.207 4.207 3 Si 0.833 3.167 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.160 1.160 7 C -0.437 4.437 8 H 0.161 0.839 9 C 0.152 3.848 10 C -0.416 4.416 11 C -0.079 4.079 12 C -0.098 4.098 13 N -0.142 5.142 14 C -0.164 4.164 15 C 0.410 3.590 16 O -0.445 6.445 17 O -0.302 6.302 18 C -0.082 4.082 19 C -0.104 4.104 20 O -0.090 6.090 21 H 0.119 0.881 22 H 0.176 0.824 23 H 0.205 0.795 24 H 0.290 0.710 25 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.772 -1.980 -0.427 2.691 hybrid contribution -0.596 1.218 0.064 1.357 sum 1.176 -0.762 -0.363 1.447 Atomic orbital electron populations 1.69732 1.10107 1.33282 1.26909 1.27630 0.95851 1.06641 0.90586 0.84648 0.79231 0.72777 0.80061 1.18070 1.18899 1.16037 1.19950 0.97182 0.87547 1.38985 0.83881 1.20448 0.78330 0.95996 0.89991 1.21394 0.98728 0.89978 1.31504 1.20236 0.93858 0.96282 0.97505 1.22462 0.95692 0.89136 1.02557 1.67348 0.97621 1.39591 1.09661 1.18976 0.91004 0.88699 1.17699 1.19990 0.87127 0.80830 0.71036 1.90831 1.33425 1.70326 1.49944 1.84652 1.41680 1.19730 1.84152 1.20443 0.95532 0.93012 0.99190 1.19874 0.95868 0.84201 1.10481 1.84542 1.25009 1.22656 1.76814 0.88083 0.82446 0.79534 0.71049 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -36.76 11.98 21.92 0.26 -36.50 15 2 C 0.02 0.69 5.50 85.42 0.47 1.15 15 3 Si 1.02 30.47 29.57 68.60 2.03 32.50 15 4 H -0.26 -7.48 7.11 99.48 0.71 -6.78 15 5 H -0.26 -7.71 7.11 99.48 0.71 -7.00 15 6 H -0.24 -6.53 7.11 99.48 0.71 -5.82 15 7 C -0.41 -18.71 9.30 23.14 0.22 -18.49 15 8 H 0.14 5.62 7.86 -2.91 -0.02 5.59 15 9 C 0.20 10.27 6.75 22.85 0.15 10.43 15 10 C -0.39 -18.24 10.94 23.14 0.25 -17.98 15 11 C -0.08 -3.54 6.22 -21.33 -0.13 -3.67 15 12 C 0.07 2.93 11.29 85.34 0.96 3.90 15 13 N -0.43 -18.23 10.07 -183.61 -1.85 -20.08 15 14 C -0.04 -1.54 6.74 41.69 0.28 -1.26 15 15 C 0.56 21.63 8.31 70.33 0.58 22.21 15 16 O -0.55 -22.89 17.07 19.88 0.34 -22.55 15 17 O -0.49 -14.57 13.23 -56.64 -0.75 -15.32 15 18 C -0.06 -2.83 9.63 22.66 0.22 -2.62 15 19 C -0.05 -2.69 7.43 23.18 0.17 -2.52 15 20 O -0.19 -10.35 8.91 -14.64 -0.13 -10.48 15 21 H 0.31 12.76 8.29 -92.71 -0.77 11.99 15 22 H 0.16 6.28 8.06 -2.91 -0.02 6.26 15 23 H 0.19 6.06 8.06 -2.91 -0.02 6.03 15 24 H 0.43 7.39 9.11 -74.06 -0.67 6.71 15 25 H 0.13 6.10 7.61 -2.91 -0.02 6.08 15 Total: -1.00 -61.88 243.24 3.67 -58.22 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.59 Total: 23.07 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 3.18 Total: -8.85 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -1.59 Total: -56.58 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -0.54 Total: -48.35 kcal Atomic # 14 Polarization: 30.47 SS G_CDS: 2.03 Total: 32.50 kcal Total: -61.88 3.67 -58.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281977.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.084 kcal (2) G-P(sol) polarization free energy of solvation -61.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds