Wall clock time and date at job start Mon Mar 30 2020 03:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29584 * 1 3 3 Si 1.86798 * 120.00369 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00273 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99859 * 3 2 1 7 7 C 1.46426 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99826 * 179.97438 * 7 2 1 9 9 C 1.39635 * 120.00312 * 359.72165 * 7 2 1 10 10 N 1.35048 * 126.32975 * 0.02562 * 9 7 2 11 11 C 1.32253 * 108.99079 * 180.02562 * 10 9 7 12 12 C 1.41237 * 131.45004 * 180.02562 * 11 10 9 13 13 C 1.35898 * 119.43149 * 179.97438 * 12 11 10 14 14 C 1.40700 * 119.81048 * 0.02562 * 13 12 11 15 15 C 1.34713 * 120.35645 * 0.02562 * 14 13 12 16 16 N 1.37117 * 120.64178 * 359.97438 * 15 14 13 17 17 C 1.34821 * 131.83353 * 180.37510 * 16 15 14 18 18 N 1.48035 * 126.64013 * 359.92282 * 17 16 15 19 19 O 1.31700 * 120.00620 * 90.21854 * 18 17 16 20 20 O 1.31707 * 119.99743 * 270.21745 * 18 17 16 21 21 H 0.97000 * 120.00194 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.28661 * 359.96712 * 12 11 10 23 23 H 1.08000 * 120.09329 * 180.02562 * 13 12 11 24 24 H 1.07997 * 119.82033 * 180.02562 * 14 13 12 25 25 H 1.07996 * 119.68090 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2958 0.0000 0.0000 3 14 2.2299 1.6177 0.0000 4 1 3.0836 1.6964 -1.2125 5 1 1.2649 2.7464 0.0006 6 1 3.0837 1.6962 1.2126 7 6 2.0279 -1.2681 -0.0006 8 1 3.1079 -1.2681 -0.0010 9 6 1.3297 -2.4774 0.0048 10 7 -0.0125 -2.6263 0.0102 11 6 -0.3024 -3.9167 0.0147 12 6 -1.5401 -4.5968 0.0207 13 6 -1.5554 -5.9557 0.0240 14 6 -0.3425 -6.6688 0.0219 15 6 0.8336 -6.0118 0.0172 16 7 0.8683 -4.6411 0.0139 17 6 1.8952 -3.7676 0.0025 18 7 3.3377 -4.1001 -0.0084 19 8 3.9710 -4.2474 -1.1537 20 8 3.9879 -4.2485 1.1273 21 1 -0.4850 0.8400 0.0004 22 1 -2.4666 -4.0418 0.0228 23 1 -2.4958 -6.4867 0.0282 24 1 -0.3544 -7.7487 0.0241 25 1 1.7580 -6.5701 0.0153 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261286642.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:23 Heat of formation + Delta-G solvation = 105.463411 kcal Electronic energy + Delta-G solvation = -15658.669099 eV Core-core repulsion = 12836.007987 eV Total energy + Delta-G solvation = -2822.661113 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.67797 -37.80279 -36.53168 -33.89417 -33.53609 -32.82769 -30.07933 -28.71579 -26.67850 -25.05576 -22.34035 -21.65936 -20.66200 -18.19338 -17.53066 -17.43114 -16.40898 -15.40719 -15.29628 -14.92162 -14.77581 -14.54764 -13.72488 -13.13112 -12.06923 -11.69216 -11.65722 -11.42549 -11.07786 -11.03907 -10.67646 -10.63131 -10.41579 -10.40131 -9.93662 -9.64714 -8.94827 -8.20263 -7.32133 -7.16255 -4.96950 0.59150 1.37515 1.83803 1.95754 2.81386 2.86897 2.89225 3.51614 3.54281 3.64686 4.17931 4.89266 4.92403 5.03830 5.39162 5.46623 5.69434 6.08076 6.25166 6.41463 6.46883 6.64640 6.68022 6.88116 7.12690 7.57433 7.57623 7.83775 8.01587 8.31894 9.04792 9.69877 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.025502 B = 0.010222 C = 0.007590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.682691 B = 2738.638381 C = 3688.220847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C 0.071 3.929 3 Si 0.929 3.071 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.406 4.406 8 H 0.094 0.906 9 C 0.291 3.709 10 N -0.474 5.474 11 C 0.275 3.725 12 C -0.113 4.113 13 C -0.093 4.093 14 C -0.192 4.192 15 C 0.064 3.936 16 N -0.330 5.330 17 C -0.194 4.194 18 N 0.042 4.958 19 O -0.169 6.169 20 O -0.170 6.170 21 H 0.293 0.707 22 H 0.146 0.854 23 H 0.132 0.868 24 H 0.139 0.861 25 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.614 -4.334 0.040 5.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.310 5.310 2 C -0.163 4.163 3 Si 0.750 3.250 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.436 4.436 8 H 0.112 0.888 9 C 0.168 3.832 10 N -0.201 5.201 11 C 0.031 3.969 12 C -0.136 4.136 13 C -0.116 4.116 14 C -0.216 4.216 15 C -0.064 4.064 16 N -0.009 5.009 17 C -0.381 4.381 18 N 0.536 4.464 19 O -0.371 6.371 20 O -0.372 6.372 21 H 0.106 0.894 22 H 0.163 0.837 23 H 0.150 0.850 24 H 0.156 0.844 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.920 -3.254 0.048 5.899 hybrid contribution 1.459 -0.373 0.003 1.506 sum -3.461 -3.628 0.051 5.014 Atomic orbital electron populations 1.69290 1.08478 1.30754 1.22517 1.27499 0.94838 1.01762 0.92160 0.86018 0.80137 0.77870 0.80963 1.17980 1.19457 1.17993 1.20053 0.94167 0.87455 1.41893 0.88757 1.17868 0.87141 0.87290 0.90915 1.71969 1.11501 1.08731 1.27871 1.21484 0.85384 0.88385 1.01662 1.20133 0.94270 0.93588 1.05577 1.20828 0.97905 0.93445 0.99462 1.20299 0.90850 1.00021 1.10461 1.21483 1.00344 0.81530 1.03078 1.41482 1.07119 1.04792 1.47536 1.19982 0.73103 0.90486 1.54556 1.49031 1.03069 0.93402 1.00899 1.96176 1.71136 1.54137 1.15686 1.96178 1.69845 1.54169 1.17017 0.89450 0.83655 0.85030 0.84370 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.02 12.06 55.98 0.67 -16.34 15 2 C 0.07 1.70 5.67 -15.21 -0.09 1.61 15 3 Si 0.93 17.50 29.64 -169.99 -5.04 12.46 15 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 5 H -0.27 -4.78 7.11 56.52 0.40 -4.38 15 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 7 C -0.41 -10.89 9.61 -35.77 -0.34 -11.24 15 8 H 0.09 2.48 7.94 -52.48 -0.42 2.06 15 9 C 0.29 8.08 6.68 -84.93 -0.57 7.52 15 10 N -0.47 -12.70 9.66 -10.24 -0.10 -12.80 15 11 C 0.28 6.45 7.76 -155.63 -1.21 5.25 15 12 C -0.11 -2.05 10.11 -39.28 -0.40 -2.45 15 13 C -0.09 -1.36 10.06 -39.49 -0.40 -1.76 15 14 C -0.19 -2.91 9.98 -39.90 -0.40 -3.31 15 15 C 0.06 1.20 10.91 -16.44 -0.18 1.03 15 16 N -0.33 -7.77 2.91 -58.06 -0.17 -7.94 15 17 C -0.19 -5.13 7.86 -142.68 -1.12 -6.25 15 18 N 0.04 1.10 4.98 33.86 0.17 1.26 15 19 O -0.17 -4.26 19.97 -31.57 -0.63 -4.89 15 20 O -0.17 -4.29 19.97 -31.57 -0.63 -4.92 15 21 H 0.29 6.30 8.27 -40.82 -0.34 5.96 15 22 H 0.15 2.30 8.06 -52.49 -0.42 1.88 15 23 H 0.13 1.40 8.06 -52.49 -0.42 0.98 15 24 H 0.14 1.56 8.06 -52.49 -0.42 1.14 15 25 H 0.14 2.45 8.06 -52.49 -0.42 2.03 15 LS Contribution 247.59 15.07 3.73 3.73 Total: -1.00 -30.23 247.59 -7.93 -38.16 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -1.24 Total: 0.88 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -4.70 Total: -9.61 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.58 Total: -35.81 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -1.26 Total: -9.81 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.04 Total: 12.46 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.23 -7.93 -38.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286642.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.621 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds