Wall clock time and date at job start Mon Mar 30 2020 03:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29584 * 1 3 3 Si 1.86798 * 120.00369 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00273 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99859 * 3 2 1 7 7 C 1.46426 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99826 * 179.97438 * 7 2 1 9 9 C 1.39635 * 120.00312 * 359.72165 * 7 2 1 10 10 N 1.35048 * 126.32975 * 0.02562 * 9 7 2 11 11 C 1.32253 * 108.99079 * 180.02562 * 10 9 7 12 12 C 1.41237 * 131.45004 * 180.02562 * 11 10 9 13 13 C 1.35898 * 119.43149 * 179.97438 * 12 11 10 14 14 C 1.40700 * 119.81048 * 0.02562 * 13 12 11 15 15 C 1.34713 * 120.35645 * 0.02562 * 14 13 12 16 16 N 1.37117 * 120.64178 * 359.97438 * 15 14 13 17 17 C 1.34821 * 131.83353 * 180.37510 * 16 15 14 18 18 N 1.48035 * 126.64013 * 359.92282 * 17 16 15 19 19 O 1.31700 * 120.00620 * 90.21854 * 18 17 16 20 20 O 1.31707 * 119.99743 * 270.21745 * 18 17 16 21 21 H 0.97000 * 120.00194 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.28661 * 359.96712 * 12 11 10 23 23 H 1.08000 * 120.09329 * 180.02562 * 13 12 11 24 24 H 1.07997 * 119.82033 * 180.02562 * 14 13 12 25 25 H 1.07996 * 119.68090 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2958 0.0000 0.0000 3 14 2.2299 1.6177 0.0000 4 1 3.0836 1.6964 -1.2125 5 1 1.2649 2.7464 0.0006 6 1 3.0837 1.6962 1.2126 7 6 2.0279 -1.2681 -0.0006 8 1 3.1079 -1.2681 -0.0010 9 6 1.3297 -2.4774 0.0048 10 7 -0.0125 -2.6263 0.0102 11 6 -0.3024 -3.9167 0.0147 12 6 -1.5401 -4.5968 0.0207 13 6 -1.5554 -5.9557 0.0240 14 6 -0.3425 -6.6688 0.0219 15 6 0.8336 -6.0118 0.0172 16 7 0.8683 -4.6411 0.0139 17 6 1.8952 -3.7676 0.0025 18 7 3.3377 -4.1001 -0.0084 19 8 3.9710 -4.2474 -1.1537 20 8 3.9879 -4.2485 1.1273 21 1 -0.4850 0.8400 0.0004 22 1 -2.4666 -4.0418 0.0228 23 1 -2.4958 -6.4867 0.0282 24 1 -0.3544 -7.7487 0.0241 25 1 1.7580 -6.5701 0.0153 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261286642.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:22 Heat of formation + Delta-G solvation = 87.943766 kcal Electronic energy + Delta-G solvation = -15659.428808 eV Core-core repulsion = 12836.007987 eV Total energy + Delta-G solvation = -2823.420822 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.36155 -39.79260 -38.12771 -35.62437 -35.56467 -34.45455 -31.79600 -30.39061 -28.52558 -26.77611 -23.94114 -23.31457 -22.47917 -19.99052 -19.47671 -19.32344 -18.03130 -17.12617 -16.88348 -16.64976 -16.42034 -16.06221 -15.35817 -14.74793 -13.56829 -13.32286 -13.29545 -12.88564 -12.78042 -12.71888 -12.59550 -12.32971 -12.05578 -11.97826 -11.96067 -11.32472 -10.77858 -9.94542 -8.97662 -8.90682 -6.89687 -1.38589 -0.04906 0.02876 0.24717 1.29568 1.31057 1.44928 1.90079 1.90348 2.09374 2.59067 3.05457 3.40967 3.62845 3.89620 4.16677 4.29405 4.33922 4.65871 4.75430 4.94420 5.14202 5.20826 5.28769 5.58930 5.61903 5.76782 6.04927 6.25199 6.48891 7.24032 7.99797 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.025502 B = 0.010222 C = 0.007590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.682691 B = 2738.638381 C = 3688.220847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.035 3.965 3 Si 1.003 2.997 4 H -0.256 1.256 5 H -0.245 1.245 6 H -0.256 1.256 7 C -0.454 4.454 8 H 0.080 0.920 9 C 0.266 3.734 10 N -0.520 5.520 11 C 0.261 3.739 12 C -0.130 4.130 13 C -0.056 4.056 14 C -0.153 4.153 15 C 0.027 3.973 16 N -0.343 5.343 17 C -0.235 4.235 18 N 0.046 4.954 19 O -0.175 6.175 20 O -0.176 6.176 21 H 0.306 0.694 22 H 0.167 0.833 23 H 0.194 0.806 24 H 0.194 0.806 25 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.735 -6.128 0.058 8.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.344 5.344 2 C -0.195 4.195 3 Si 0.819 3.181 4 H -0.180 1.180 5 H -0.168 1.168 6 H -0.180 1.180 7 C -0.484 4.484 8 H 0.098 0.902 9 C 0.142 3.858 10 N -0.249 5.249 11 C 0.017 3.983 12 C -0.152 4.152 13 C -0.079 4.079 14 C -0.176 4.176 15 C -0.098 4.098 16 N -0.023 5.023 17 C -0.421 4.421 18 N 0.539 4.461 19 O -0.377 6.377 20 O -0.378 6.378 21 H 0.118 0.882 22 H 0.184 0.816 23 H 0.211 0.789 24 H 0.212 0.788 25 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.051 -5.128 0.067 8.718 hybrid contribution 1.902 -0.209 -0.001 1.914 sum -5.148 -5.336 0.065 7.415 Atomic orbital electron populations 1.69299 1.09828 1.32438 1.22807 1.28406 0.95707 1.04260 0.91141 0.84980 0.78952 0.73523 0.80620 1.17989 1.16807 1.18007 1.20285 0.93898 0.89265 1.44979 0.90170 1.18283 0.88188 0.88125 0.91170 1.71837 1.11008 1.11119 1.30925 1.22305 0.87056 0.88091 1.00812 1.20652 0.92849 0.95347 1.06375 1.21587 1.00224 0.91977 0.94157 1.21140 0.89263 1.02594 1.04595 1.22160 1.02751 0.80060 1.04851 1.41562 1.05978 1.06101 1.48674 1.20128 0.73377 0.91376 1.57255 1.49034 1.03314 0.93022 1.00748 1.96143 1.71295 1.54458 1.15831 1.96143 1.69992 1.54480 1.17156 0.88179 0.81601 0.78900 0.78850 0.83543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.90 12.06 23.19 0.28 -36.62 15 2 C 0.03 1.73 5.67 87.16 0.49 2.23 15 3 Si 1.00 36.75 29.64 68.60 2.03 38.78 15 4 H -0.26 -9.26 7.11 99.48 0.71 -8.56 15 5 H -0.25 -7.89 7.11 99.48 0.71 -7.18 15 6 H -0.26 -9.27 7.11 99.48 0.71 -8.57 15 7 C -0.45 -26.00 9.61 24.74 0.24 -25.76 15 8 H 0.08 4.57 7.94 -2.91 -0.02 4.55 15 9 C 0.27 15.70 6.68 39.63 0.26 15.97 15 10 N -0.52 -29.08 9.66 -186.31 -1.80 -30.88 15 11 C 0.26 12.32 7.76 134.08 1.04 13.36 15 12 C -0.13 -4.33 10.11 22.46 0.23 -4.10 15 13 C -0.06 -1.29 10.06 22.33 0.22 -1.07 15 14 C -0.15 -3.76 9.98 22.06 0.22 -3.54 15 15 C 0.03 0.97 10.91 83.06 0.91 1.88 15 16 N -0.34 -16.30 2.91 -337.59 -0.98 -17.28 15 17 C -0.24 -13.04 7.86 129.41 1.02 -12.02 15 18 N 0.05 2.49 4.98 -46.79 -0.23 2.25 15 19 O -0.18 -9.21 19.97 3.51 0.07 -9.14 15 20 O -0.18 -9.24 19.97 3.50 0.07 -9.17 15 21 H 0.31 13.39 8.27 -92.71 -0.77 12.62 15 22 H 0.17 4.74 8.06 -2.91 -0.02 4.72 15 23 H 0.19 2.31 8.06 -2.91 -0.02 2.29 15 24 H 0.19 2.74 8.06 -2.91 -0.02 2.71 15 25 H 0.15 4.93 8.06 -2.91 -0.02 4.90 15 Total: -1.00 -72.93 247.59 5.31 -67.62 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 1.24 Total: 7.49 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 4.63 Total: -13.06 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -2.74 Total: -82.52 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.14 Total: -18.31 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.78 kcal Total: -72.93 5.31 -67.62 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286642.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.561 kcal (2) G-P(sol) polarization free energy of solvation -72.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds