Wall clock time and date at job start Mon Mar 30 2020 03:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47914 * 111.00188 * 2 1 4 4 C 1.54597 * 102.62284 * 149.11179 * 3 2 1 5 5 C 1.51574 * 102.83811 * 334.46767 * 4 3 2 6 6 C 1.37921 * 131.56067 * 196.07496 * 5 4 3 7 7 C 1.38301 * 120.08095 * 179.64598 * 6 5 4 8 8 C 1.38309 * 119.87999 * 359.72380 * 7 6 5 9 9 C 1.37907 * 120.26681 * 0.65092 * 8 7 6 10 10 C 1.50695 * 119.90378 * 179.72635 * 9 8 7 11 11 H 1.09003 * 109.47560 * 213.20023 * 10 9 8 12 12 N 1.46897 * 109.47149 * 333.19993 * 10 9 8 13 13 C 1.50701 * 109.47281 * 93.19797 * 10 9 8 14 14 H 1.07999 * 119.99657 * 0.02562 * 13 10 9 15 15 C 1.37874 * 120.00266 * 179.97438 * 13 10 9 16 16 N 1.31519 * 120.00242 * 180.02562 * 15 13 10 17 17 Si 1.86803 * 119.99838 * 0.02562 * 15 13 10 18 18 H 1.48503 * 109.47069 * 89.99717 * 17 15 13 19 19 H 1.48507 * 109.47062 * 209.99426 * 17 15 13 20 20 H 1.48488 * 109.47254 * 329.99875 * 17 15 13 21 21 C 1.38967 * 107.95653 * 15.93679 * 5 4 3 22 22 H 1.09009 * 109.46988 * 289.84240 * 1 2 3 23 23 H 1.09000 * 109.47352 * 49.84325 * 1 2 3 24 24 H 1.09006 * 109.47088 * 169.84643 * 1 2 3 25 25 H 1.09001 * 110.77333 * 30.82995 * 3 2 1 26 26 H 1.08999 * 110.77778 * 267.39657 * 3 2 1 27 27 H 1.08997 * 110.74280 * 216.12334 * 4 3 2 28 28 H 1.09004 * 110.89602 * 92.87519 * 4 3 2 29 29 H 1.07997 * 119.96217 * 359.61493 * 6 5 4 30 30 H 1.07997 * 120.06412 * 180.02562 * 7 6 5 31 31 H 1.08003 * 119.86550 * 180.40197 * 8 7 6 32 32 H 1.00900 * 111.00352 * 59.99810 * 12 10 9 33 33 H 1.00900 * 111.00283 * 183.95543 * 12 10 9 34 34 H 0.96998 * 119.99891 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3809 0.0000 4 6 3.3288 1.2323 0.7745 5 6 3.0803 0.0126 1.6394 6 6 3.7401 -0.4716 2.7496 7 6 3.2975 -1.6254 3.3705 8 6 2.1883 -2.2900 2.8797 9 6 1.5296 -1.8143 1.7654 10 6 0.3256 -2.5483 1.2339 11 1 0.2910 -2.4520 0.1487 12 7 0.4186 -3.9687 1.5966 13 6 -0.9262 -1.9585 1.8307 14 1 -0.8568 -1.1342 2.5251 15 6 -2.1601 -2.4704 1.4895 16 7 -3.2526 -1.9553 2.0099 17 14 -2.2801 -3.8957 0.2879 18 1 -2.2310 -5.1782 1.0349 19 1 -3.5604 -3.8067 -0.4593 20 1 -1.1444 -3.8352 -0.6668 21 6 1.9708 -0.6532 1.1326 22 1 -0.3633 0.3489 0.9667 23 1 -0.3634 0.6627 -0.7854 24 1 -0.3633 -1.0116 -0.1812 25 1 1.3206 2.0554 0.5223 26 1 2.1809 1.7253 -1.0180 27 1 3.5167 2.1112 1.3912 28 1 4.1596 1.0578 0.0907 29 1 4.6037 0.0505 3.1342 30 1 3.8141 -2.0041 4.2401 31 1 1.8389 -3.1874 3.3687 32 1 0.4521 -4.0848 2.5984 33 1 -0.3441 -4.4947 1.1970 34 1 -4.1206 -2.3157 1.7701 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261290562.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:54 Heat of formation + Delta-G solvation = 52.307518 kcal Electronic energy + Delta-G solvation = -16719.810283 eV Core-core repulsion = 14231.936257 eV Total energy + Delta-G solvation = -2487.874025 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.25248 -36.41916 -35.20126 -32.14862 -31.33127 -29.16340 -28.28878 -26.60937 -24.51282 -22.97687 -21.70256 -20.56250 -19.21132 -17.20990 -16.04849 -15.67623 -15.19298 -14.95960 -14.56750 -14.13429 -13.35282 -12.98475 -12.81419 -12.42504 -12.39364 -12.12719 -11.92559 -11.63700 -11.43511 -10.99536 -10.92752 -10.80089 -10.56429 -10.21933 -9.92915 -9.47712 -9.19768 -8.81156 -8.02686 -7.55630 -6.99602 -6.26791 -4.28391 2.00660 2.09648 3.10831 3.25687 3.27145 4.19773 4.21127 4.54251 4.98064 4.99896 5.05499 5.41449 5.51963 5.63263 5.74822 5.79412 5.85455 5.98528 6.11144 6.13445 6.24465 6.37855 6.46196 6.56627 6.70917 6.96478 7.01006 7.13446 7.33189 7.36940 7.43335 7.64004 7.87386 8.07813 8.27706 8.47665 8.78983 9.31743 10.85164 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.029464 B = 0.010294 C = 0.008627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.082285 B = 2719.433281 C = 3244.869553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.481 5.481 3 C 0.044 3.956 4 C -0.078 4.078 5 C -0.154 4.154 6 C -0.104 4.104 7 C -0.150 4.150 8 C -0.088 4.088 9 C -0.039 4.039 10 C 0.204 3.796 11 H 0.057 0.943 12 N -0.849 5.849 13 C -0.538 4.538 14 H 0.075 0.925 15 C 0.074 3.926 16 N -0.888 5.888 17 Si 0.867 3.133 18 H -0.275 1.275 19 H -0.290 1.290 20 H -0.258 1.258 21 C 0.100 3.900 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.103 0.897 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.330 0.670 33 H 0.316 0.684 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.954 3.655 -1.466 10.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.195 5.195 3 C -0.083 4.083 4 C -0.116 4.116 5 C -0.157 4.157 6 C -0.122 4.122 7 C -0.169 4.169 8 C -0.107 4.107 9 C -0.042 4.042 10 C 0.096 3.904 11 H 0.074 0.926 12 N -0.383 5.383 13 C -0.578 4.578 14 H 0.093 0.907 15 C -0.130 4.130 16 N -0.525 5.525 17 Si 0.695 3.305 18 H -0.201 1.201 19 H -0.217 1.217 20 H -0.183 1.183 21 C 0.001 3.999 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.122 0.878 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.132 0.868 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.521 3.446 -2.418 11.332 hybrid contribution -1.491 -0.228 0.521 1.595 sum 9.031 3.218 -1.897 9.773 Atomic orbital electron populations 1.23068 0.83836 1.05219 1.01033 1.60567 1.10607 1.13024 1.35309 1.23220 0.95099 0.89309 1.00630 1.21192 0.97679 0.95745 0.96947 1.20373 0.98990 0.98631 0.97711 1.20114 0.99746 0.96901 0.95482 1.20860 0.98492 0.96622 1.00935 1.20668 0.94900 0.99494 0.95634 1.19424 0.96543 0.93713 0.94532 1.18649 0.90630 0.84650 0.96516 0.92596 1.59731 1.50321 1.12156 1.16070 1.21590 0.89047 1.19339 1.27815 0.90699 1.24995 0.95734 0.96718 0.95545 1.69888 0.97960 1.41472 1.43176 0.87099 0.77898 0.83040 0.82423 1.20129 1.21729 1.18263 1.19405 0.95471 0.95365 0.89628 0.92956 0.93031 0.87832 0.92630 0.89541 0.90942 0.90276 0.87250 0.86760 0.85949 0.85683 0.86772 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 7.73 60.06 0.46 0.75 16 2 N -0.48 -9.26 5.30 -176.83 -0.94 -10.20 16 3 C 0.04 0.67 6.87 -2.43 -0.02 0.65 16 4 C -0.08 -1.12 7.04 -26.61 -0.19 -1.31 16 5 C -0.15 -2.75 6.23 -104.04 -0.65 -3.40 16 6 C -0.10 -1.72 10.03 -39.67 -0.40 -2.11 16 7 C -0.15 -2.55 10.06 -39.53 -0.40 -2.95 16 8 C -0.09 -1.72 9.25 -39.68 -0.37 -2.09 16 9 C -0.04 -0.85 4.97 -104.31 -0.52 -1.37 16 10 C 0.20 4.80 1.72 -70.02 -0.12 4.68 16 11 H 0.06 1.40 5.23 -51.93 -0.27 1.13 16 12 N -0.85 -18.72 8.78 -6.65 -0.06 -18.78 16 13 C -0.54 -14.13 6.37 -34.44 -0.22 -14.35 16 14 H 0.07 2.21 7.66 -52.49 -0.40 1.80 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 16 N -0.89 -25.65 13.96 55.43 0.77 -24.88 16 17 Si 0.87 20.45 24.61 -169.99 -4.18 16.26 16 18 H -0.27 -6.28 7.01 56.52 0.40 -5.89 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 21 C 0.10 2.05 5.81 -83.40 -0.48 1.57 16 22 H 0.05 1.17 7.04 -51.92 -0.37 0.80 16 23 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 24 H 0.10 2.36 4.27 -51.93 -0.22 2.14 16 25 H 0.06 0.83 7.87 -51.93 -0.41 0.42 16 26 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.12 2.26 6.29 -52.48 -0.33 1.93 16 32 H 0.33 6.86 7.17 -39.29 -0.28 6.57 16 33 H 0.32 7.08 4.30 -39.29 -0.17 6.91 16 34 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 261.64 15.07 3.94 3.94 Total: -1.00 -29.00 261.64 -7.61 -36.61 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -4.16 Total: 15.08 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -2.99 Total: -18.04 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.22 Total: -53.86 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.18 Total: 16.26 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.00 -7.61 -36.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261290562.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.918 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds