Wall clock time and date at job start Mon Mar 30 2020 03:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48053 * 110.99877 * 2 1 4 4 C 1.51181 * 105.67274 * 146.96886 * 3 2 1 5 5 C 1.38182 * 131.77887 * 162.47766 * 4 3 2 6 6 C 1.38225 * 120.02870 * 180.02562 * 5 4 3 7 7 C 1.38257 * 120.00210 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99625 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47060 * 200.00385 * 8 7 6 10 10 N 1.46896 * 109.47239 * 320.00539 * 8 7 6 11 11 C 1.50703 * 109.47064 * 80.00421 * 8 7 6 12 12 H 1.07996 * 119.99751 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 8 7 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.46999 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46942 * 119.99666 * 15 13 11 18 18 H 1.48504 * 109.46979 * 239.99580 * 15 13 11 19 19 C 1.38215 * 120.00103 * 0.27894 * 7 6 5 20 20 C 1.38179 * 120.03265 * 359.44659 * 19 7 6 21 21 C 1.48061 * 110.99725 * 115.00173 * 2 1 3 22 22 H 1.09004 * 109.47269 * 304.99788 * 1 2 3 23 23 H 1.08996 * 109.47531 * 65.00040 * 1 2 3 24 24 H 1.09003 * 109.47067 * 185.00269 * 1 2 3 25 25 H 1.08998 * 110.20927 * 27.91408 * 3 2 1 26 26 H 1.09001 * 110.20413 * 266.01473 * 3 2 1 27 27 H 1.07996 * 119.98811 * 0.03687 * 5 4 3 28 28 H 1.08001 * 119.99925 * 179.97438 * 6 5 4 29 29 H 1.00900 * 111.00550 * 59.99964 * 10 8 7 30 30 H 1.00896 * 111.00310 * 183.95550 * 10 8 7 31 31 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 32 32 H 1.08001 * 119.98055 * 179.72789 * 19 7 6 33 33 H 1.09000 * 110.20861 * 93.98260 * 21 2 1 34 34 H 1.08999 * 110.27934 * 332.11592 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9996 1.3822 0.0000 4 6 3.2852 1.3262 0.7934 5 6 4.3573 2.1945 0.8718 6 6 5.4294 1.8976 1.6922 7 6 5.4292 0.7316 2.4353 8 6 6.5978 0.4083 3.3302 9 1 6.6036 -0.6595 3.5487 10 7 7.8489 0.7766 2.6540 11 6 6.4751 1.1837 4.6166 12 1 5.6350 1.8448 4.7705 13 6 7.4357 1.0499 5.5965 14 7 8.4589 0.2452 5.4088 15 14 7.2831 2.0104 7.1914 16 1 6.0506 2.8380 7.1548 17 1 7.2111 1.0646 8.3339 18 1 8.4667 2.8927 7.3530 19 6 4.3595 -0.1399 2.3534 20 6 3.2849 0.1589 1.5379 21 6 1.9996 -0.5842 1.2528 22 1 -0.3634 0.5894 0.8419 23 1 -0.3634 0.4343 -0.9313 24 1 -0.3633 -1.0238 0.0896 25 1 1.2907 2.0576 0.4789 26 1 2.2008 1.7082 -1.0205 27 1 4.3575 3.1056 0.2920 28 1 6.2672 2.5764 1.7528 29 1 7.8680 1.7625 2.4406 30 1 8.6503 0.5106 3.2064 31 1 9.1349 0.1513 6.0981 32 1 4.3617 -1.0527 2.9306 33 1 2.2008 -1.6468 1.1170 34 1 1.2912 -0.4368 2.0680 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261297133.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:10 Heat of formation + Delta-G solvation = 33.477263 kcal Electronic energy + Delta-G solvation = -15804.286043 eV Core-core repulsion = 13315.595477 eV Total energy + Delta-G solvation = -2488.690566 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.96660 -37.08207 -34.39248 -31.70578 -30.97532 -29.97798 -27.43270 -26.31368 -25.54476 -22.49771 -21.90289 -20.87934 -19.27116 -16.53559 -15.87057 -15.68896 -15.28746 -15.09321 -14.39359 -13.74697 -13.53398 -13.15900 -12.93762 -12.84624 -12.58939 -12.24477 -11.90813 -11.47228 -11.45473 -11.21701 -11.01458 -10.89743 -10.65352 -10.23782 -9.99212 -9.60558 -8.76119 -8.66467 -8.15098 -7.68434 -7.19213 -6.11302 -4.28549 1.99589 2.05574 3.19154 3.28111 3.32915 4.04086 4.26602 4.45563 4.72371 4.83618 5.10996 5.24922 5.29552 5.48207 5.54796 5.59826 5.71107 5.74806 5.82863 5.94843 6.18744 6.27882 6.54308 6.60529 6.66727 6.67935 6.99567 7.10244 7.15677 7.21642 7.62592 7.71806 7.80242 8.07920 8.64940 8.91164 9.09986 9.43543 10.85866 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.040732 B = 0.005968 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.254991 B = 4690.641482 C = 4856.392929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.511 5.511 3 C 0.083 3.917 4 C -0.137 4.137 5 C -0.103 4.103 6 C -0.106 4.106 7 C -0.017 4.017 8 C 0.239 3.761 9 H 0.047 0.953 10 N -0.849 5.849 11 C -0.543 4.543 12 H 0.056 0.944 13 C 0.066 3.934 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.283 1.283 19 C -0.103 4.103 20 C -0.110 4.110 21 C 0.079 3.921 22 H 0.029 0.971 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.311 0.689 30 H 0.356 0.644 31 H 0.265 0.735 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.161 1.489 -7.679 13.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.234 5.234 3 C -0.044 4.044 4 C -0.138 4.138 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.018 4.018 8 C 0.129 3.871 9 H 0.065 0.935 10 N -0.379 5.379 11 C -0.583 4.583 12 H 0.075 0.925 13 C -0.136 4.136 14 N -0.532 5.532 15 Si 0.724 3.276 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.209 1.209 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.048 4.048 22 H 0.048 0.952 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.129 0.871 28 H 0.139 0.861 29 H 0.121 0.879 30 H 0.172 0.828 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.105 0.895 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.094 0.577 -8.651 14.080 hybrid contribution -0.197 1.588 2.599 3.052 sum -11.291 2.165 -6.052 12.992 Atomic orbital electron populations 1.22588 0.87715 1.02071 1.01086 1.65201 1.08127 1.15458 1.34647 1.21516 0.93211 0.89861 0.99832 1.20224 0.96239 0.96744 1.00562 1.20342 0.93168 0.98655 0.99957 1.20865 0.97559 0.97533 0.96528 1.20406 0.95691 0.92224 0.93483 1.18010 0.84199 0.96895 0.87964 0.93493 1.59528 1.06733 1.20516 1.51157 1.21856 1.08762 1.26376 1.01260 0.92549 1.25025 0.95223 0.94943 0.98455 1.69754 1.11768 1.36889 1.34794 0.86460 0.78098 0.79829 0.83172 1.19765 1.20822 1.20900 1.20336 0.92730 1.00168 0.98965 1.20322 0.95660 0.96395 0.98648 1.21564 0.93251 0.99541 0.90445 0.95198 0.91116 0.91096 0.92934 0.89844 0.87084 0.86074 0.87919 0.82811 0.92480 0.86581 0.89521 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.35 60.07 0.56 0.71 16 2 N -0.51 -7.01 5.76 -243.19 -1.40 -8.41 16 3 C 0.08 1.16 6.61 -4.10 -0.03 1.13 16 4 C -0.14 -2.35 6.26 -104.33 -0.65 -3.00 16 5 C -0.10 -1.79 10.04 -39.61 -0.40 -2.19 16 6 C -0.11 -2.12 9.29 -39.58 -0.37 -2.49 16 7 C -0.02 -0.38 4.89 -104.62 -0.51 -0.89 16 8 C 0.24 5.97 2.95 -70.02 -0.21 5.76 16 9 H 0.05 1.28 8.00 -51.93 -0.42 0.87 16 10 N -0.85 -20.29 9.02 -6.65 -0.06 -20.35 16 11 C -0.54 -14.53 8.70 -34.44 -0.30 -14.83 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.07 1.76 5.38 -17.82 -0.10 1.67 16 14 N -0.89 -24.44 11.54 55.43 0.64 -23.80 16 15 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C -0.10 -2.08 9.66 -39.61 -0.38 -2.46 16 20 C -0.11 -1.96 6.26 -104.33 -0.65 -2.62 16 21 C 0.08 1.16 6.61 -4.10 -0.03 1.14 16 22 H 0.03 0.30 7.91 -51.93 -0.41 -0.12 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.67 7.69 -51.93 -0.40 0.27 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.12 2.33 6.66 -52.49 -0.35 1.98 16 29 H 0.31 7.01 7.34 -39.29 -0.29 6.72 16 30 H 0.36 9.06 7.08 -39.29 -0.28 8.78 16 31 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.12 2.25 8.03 -52.49 -0.42 1.82 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.76 7.78 -51.93 -0.40 0.35 16 LS Contribution 280.36 15.07 4.23 4.23 Total: -1.00 -28.08 280.36 -9.30 -37.38 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -4.62 Total: 13.22 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -3.06 Total: -18.08 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.82 Total: -52.56 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.08 -9.30 -37.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261297133.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.859 kcal (2) G-P(sol) polarization free energy of solvation -28.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds