Wall clock time and date at job start Mon Mar 30 2020 03:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48053 * 110.99877 * 2 1 4 4 C 1.51181 * 105.67274 * 146.96886 * 3 2 1 5 5 C 1.38182 * 131.77887 * 162.47766 * 4 3 2 6 6 C 1.38225 * 120.02870 * 180.02562 * 5 4 3 7 7 C 1.38257 * 120.00210 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99625 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47060 * 200.00385 * 8 7 6 10 10 N 1.46896 * 109.47239 * 320.00539 * 8 7 6 11 11 C 1.50703 * 109.47064 * 80.00421 * 8 7 6 12 12 H 1.07996 * 119.99751 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 8 7 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.46999 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46942 * 119.99666 * 15 13 11 18 18 H 1.48504 * 109.46979 * 239.99580 * 15 13 11 19 19 C 1.38215 * 120.00103 * 0.27894 * 7 6 5 20 20 C 1.38179 * 120.03265 * 359.44659 * 19 7 6 21 21 C 1.48061 * 110.99725 * 115.00173 * 2 1 3 22 22 H 1.09004 * 109.47269 * 304.99788 * 1 2 3 23 23 H 1.08996 * 109.47531 * 65.00040 * 1 2 3 24 24 H 1.09003 * 109.47067 * 185.00269 * 1 2 3 25 25 H 1.08998 * 110.20927 * 27.91408 * 3 2 1 26 26 H 1.09001 * 110.20413 * 266.01473 * 3 2 1 27 27 H 1.07996 * 119.98811 * 0.03687 * 5 4 3 28 28 H 1.08001 * 119.99925 * 179.97438 * 6 5 4 29 29 H 1.00900 * 111.00550 * 59.99964 * 10 8 7 30 30 H 1.00896 * 111.00310 * 183.95550 * 10 8 7 31 31 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 32 32 H 1.08001 * 119.98055 * 179.72789 * 19 7 6 33 33 H 1.09000 * 110.20861 * 93.98260 * 21 2 1 34 34 H 1.08999 * 110.27934 * 332.11592 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9996 1.3822 0.0000 4 6 3.2852 1.3262 0.7934 5 6 4.3573 2.1945 0.8718 6 6 5.4294 1.8976 1.6922 7 6 5.4292 0.7316 2.4353 8 6 6.5978 0.4083 3.3302 9 1 6.6036 -0.6595 3.5487 10 7 7.8489 0.7766 2.6540 11 6 6.4751 1.1837 4.6166 12 1 5.6350 1.8448 4.7705 13 6 7.4357 1.0499 5.5965 14 7 8.4589 0.2452 5.4088 15 14 7.2831 2.0104 7.1914 16 1 6.0506 2.8380 7.1548 17 1 7.2111 1.0646 8.3339 18 1 8.4667 2.8927 7.3530 19 6 4.3595 -0.1399 2.3534 20 6 3.2849 0.1589 1.5379 21 6 1.9996 -0.5842 1.2528 22 1 -0.3634 0.5894 0.8419 23 1 -0.3634 0.4343 -0.9313 24 1 -0.3633 -1.0238 0.0896 25 1 1.2907 2.0576 0.4789 26 1 2.2008 1.7082 -1.0205 27 1 4.3575 3.1056 0.2920 28 1 6.2672 2.5764 1.7528 29 1 7.8680 1.7625 2.4406 30 1 8.6503 0.5106 3.2064 31 1 9.1349 0.1513 6.0981 32 1 4.3617 -1.0527 2.9306 33 1 2.2008 -1.6468 1.1170 34 1 1.2912 -0.4368 2.0680 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261297133.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:10 Heat of formation + Delta-G solvation = 14.159982 kcal Electronic energy + Delta-G solvation = -15805.123703 eV Core-core repulsion = 13315.595477 eV Total energy + Delta-G solvation = -2489.528227 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.27285 -38.49302 -36.14534 -33.53981 -32.34688 -31.47560 -28.81524 -27.85788 -27.06094 -24.14832 -23.22565 -22.11445 -20.86415 -18.58669 -17.37647 -17.01273 -16.67025 -16.41489 -16.12810 -15.02523 -14.85660 -14.75907 -14.74272 -13.94435 -13.86706 -13.66956 -13.36865 -13.19219 -12.83789 -12.78476 -12.48519 -12.41008 -12.30100 -11.92864 -11.70105 -11.38212 -10.73947 -9.87245 -9.63054 -9.24427 -9.00079 -8.13869 -6.40895 0.52947 0.57600 1.34477 1.37560 1.48748 2.34315 2.92510 3.02811 3.04928 3.49575 3.62757 4.16053 4.23694 4.34949 4.38367 4.50022 4.61533 4.62570 4.64973 4.72467 4.78977 4.91053 5.02477 5.05697 5.21827 5.39909 5.48776 5.57205 5.65256 5.83009 5.91869 6.01848 6.11864 6.21630 6.61294 6.89596 7.09455 7.35837 8.80221 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.040732 B = 0.005968 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.254991 B = 4690.641482 C = 4856.392929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.522 5.522 3 C 0.086 3.914 4 C -0.136 4.136 5 C -0.099 4.099 6 C -0.119 4.119 7 C -0.049 4.049 8 C 0.244 3.756 9 H 0.009 0.991 10 N -0.842 5.842 11 C -0.557 4.557 12 H 0.045 0.955 13 C 0.022 3.978 14 N -0.916 5.916 15 Si 0.961 3.039 16 H -0.274 1.274 17 H -0.279 1.279 18 H -0.275 1.275 19 C -0.122 4.122 20 C -0.116 4.116 21 C 0.082 3.918 22 H 0.035 0.965 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.146 0.854 28 H 0.121 0.879 29 H 0.319 0.681 30 H 0.345 0.655 31 H 0.268 0.732 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.161 2.636 -8.562 15.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.245 5.245 3 C -0.041 4.041 4 C -0.137 4.137 5 C -0.117 4.117 6 C -0.138 4.138 7 C -0.049 4.049 8 C 0.134 3.866 9 H 0.027 0.973 10 N -0.371 5.371 11 C -0.597 4.597 12 H 0.063 0.937 13 C -0.178 4.178 14 N -0.555 5.555 15 Si 0.786 3.214 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.201 1.201 19 C -0.141 4.141 20 C -0.117 4.117 21 C -0.045 4.045 22 H 0.054 0.946 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.119 0.881 27 H 0.163 0.837 28 H 0.139 0.861 29 H 0.129 0.871 30 H 0.160 0.840 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.108 1.727 -9.549 16.309 hybrid contribution 0.363 1.204 2.804 3.073 sum -12.745 2.931 -6.745 14.715 Atomic orbital electron populations 1.22698 0.85413 1.03181 1.02250 1.65241 1.10338 1.15212 1.33754 1.21608 0.91626 0.90523 1.00318 1.20758 0.97247 0.95783 0.99909 1.20643 0.92159 0.99811 0.99063 1.20930 0.98770 0.96914 0.97168 1.20218 0.95533 0.94216 0.94960 1.17790 0.85808 0.94418 0.88593 0.97275 1.59486 1.06033 1.21058 1.50523 1.22020 1.08551 1.26595 1.02529 0.93661 1.25756 0.94874 0.95771 1.01399 1.69851 1.12220 1.37698 1.35745 0.85469 0.78061 0.78513 0.79318 1.19816 1.20450 1.20077 1.20365 0.93584 1.00020 1.00168 1.20676 0.96060 0.97369 0.97585 1.21596 0.91831 0.99535 0.91563 0.94602 0.89412 0.90027 0.91133 0.88106 0.83671 0.86144 0.87054 0.84010 0.92226 0.87277 0.89007 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.35 127.69 1.19 1.40 16 2 N -0.52 -12.57 5.76 -923.33 -5.32 -17.89 16 3 C 0.09 2.08 6.61 85.49 0.57 2.65 16 4 C -0.14 -4.36 6.26 -19.68 -0.12 -4.48 16 5 C -0.10 -3.25 10.04 22.25 0.22 -3.03 16 6 C -0.12 -4.76 9.29 22.27 0.21 -4.55 16 7 C -0.05 -2.21 4.89 -19.86 -0.10 -2.31 16 8 C 0.24 12.73 2.95 43.43 0.13 12.86 16 9 H 0.01 0.54 8.00 -2.39 -0.02 0.52 16 10 N -0.84 -41.64 9.02 -174.95 -1.58 -43.22 16 11 C -0.56 -30.74 8.70 25.60 0.22 -30.51 16 12 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 13 C 0.02 1.21 5.38 84.65 0.46 1.66 16 14 N -0.92 -51.16 11.54 21.45 0.25 -50.91 16 15 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 19 C -0.12 -5.08 9.66 22.25 0.22 -4.86 16 20 C -0.12 -4.06 6.26 -19.68 -0.12 -4.18 16 21 C 0.08 2.23 6.61 85.49 0.57 2.80 16 22 H 0.04 0.57 7.91 -2.39 -0.02 0.55 16 23 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.49 7.69 -2.39 -0.02 1.47 16 26 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 28 H 0.12 4.67 6.66 -2.91 -0.02 4.65 16 29 H 0.32 14.75 7.34 -89.69 -0.66 14.09 16 30 H 0.35 18.22 7.08 -89.70 -0.63 17.59 16 31 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 32 H 0.11 4.49 8.03 -2.91 -0.02 4.46 16 33 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.07 1.68 7.78 -2.39 -0.02 1.67 16 Total: -1.00 -60.92 280.36 -1.38 -62.30 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: -0.18 Total: 37.13 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 3.43 Total: -32.55 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -6.65 Total: -112.02 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -60.92 -1.38 -62.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261297133.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.456 kcal (2) G-P(sol) polarization free energy of solvation -60.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds