Wall clock time and date at job start Mon Mar 30 2020 03:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 120.00099 * 2 1 4 4 H 1.48503 * 109.46667 * 269.99668 * 3 2 1 5 5 H 1.48491 * 109.47065 * 29.99647 * 3 2 1 6 6 H 1.48504 * 109.47063 * 150.00033 * 3 2 1 7 7 C 1.37879 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99710 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00347 * 359.97438 * 7 2 1 10 10 O 1.42100 * 104.27498 * 63.92684 * 9 7 2 11 11 O 1.42103 * 104.27888 * 296.07457 * 9 7 2 12 12 C 1.81399 * 104.45175 * 179.97438 * 9 7 2 13 13 C 1.50699 * 109.47054 * 180.02562 * 12 9 7 14 14 O 1.21282 * 120.00041 * 359.97438 * 13 12 9 15 15 N 1.34779 * 120.00037 * 180.02562 * 13 12 9 16 16 C 1.46500 * 120.00169 * 180.02562 * 15 13 12 17 17 C 1.52992 * 117.49908 * 223.61922 * 16 15 13 18 18 C 1.52994 * 117.50047 * 154.99430 * 16 15 13 19 19 H 0.96998 * 119.99506 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47070 * 300.00246 * 12 9 7 21 21 H 1.09001 * 109.46593 * 60.00243 * 12 9 7 22 22 H 0.96996 * 119.99844 * 359.97438 * 15 13 12 23 23 H 1.09005 * 115.54704 * 9.32743 * 16 15 13 24 24 H 1.08998 * 117.50095 * 359.97438 * 17 16 15 25 25 H 1.09007 * 117.49624 * 145.02066 * 17 16 15 26 26 H 1.08996 * 117.50255 * 214.98052 * 18 16 15 27 27 H 1.09007 * 117.49803 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1236 -2.7200 0.0019 10 8 0.4237 -2.7217 -1.2348 11 8 0.4246 -2.7201 1.2391 12 6 2.4185 -3.9903 0.0015 13 6 1.7821 -5.3563 0.0019 14 8 0.5739 -5.4625 0.0030 15 7 2.5556 -6.4601 0.0022 16 6 1.9369 -7.7881 0.0021 17 6 2.5289 -8.8432 0.9386 18 6 2.7536 -8.9479 -0.5712 19 1 -0.4849 0.8401 -0.0004 20 1 3.0370 -3.8783 -0.8890 21 1 3.0383 -3.8775 0.8910 22 1 3.5218 -6.3752 0.0018 23 1 0.8588 -7.8044 -0.1576 24 1 3.3789 -8.5496 1.5545 25 1 1.8401 -9.5540 1.3953 26 1 2.2128 -9.7274 -1.1077 27 1 3.7511 -8.7227 -0.9487 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300792897.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:03 Heat of formation + Delta-G solvation = -129.129341 kcal Electronic energy + Delta-G solvation = -14383.300070 eV Core-core repulsion = 11653.617452 eV Total energy + Delta-G solvation = -2729.682618 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.04092 -38.17888 -37.17709 -36.12592 -35.06513 -34.20883 -31.00064 -28.22482 -23.51413 -23.27659 -22.03766 -20.73846 -18.96402 -18.23443 -17.91493 -17.31518 -16.93250 -16.28477 -15.80272 -15.71393 -15.40033 -14.93683 -13.90741 -13.75463 -13.64236 -13.27713 -12.95947 -12.60062 -12.38712 -12.36754 -12.30874 -12.23230 -11.62052 -11.59994 -11.31206 -11.18519 -10.70240 -9.89164 -8.68207 -7.44248 -0.13758 1.21938 1.37284 1.40371 1.55600 1.84005 2.23281 2.64904 2.94192 3.18532 3.67036 3.74505 3.76175 3.86439 4.05426 4.06399 4.34682 4.69239 4.73705 4.75650 5.00677 5.20517 5.30436 5.36365 5.91008 6.21252 6.82809 6.94837 8.29283 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.067366 B = 0.006318 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.538914 B = 4430.856753 C = 4600.163682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.997 3.003 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.238 1.238 7 C -1.030 5.030 8 H 0.136 0.864 9 S 2.533 3.467 10 O -1.022 7.022 11 O -1.022 7.022 12 C -0.643 4.643 13 C 0.534 3.466 14 O -0.587 6.587 15 N -0.672 5.672 16 C 0.029 3.971 17 C -0.178 4.178 18 C -0.162 4.162 19 H 0.295 0.705 20 H 0.194 0.806 21 H 0.194 0.806 22 H 0.425 0.575 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.300 -12.425 0.090 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.151 4.151 3 Si 0.814 3.186 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.160 1.160 7 C -1.164 5.164 8 H 0.154 0.846 9 S 2.722 3.278 10 O -1.019 7.019 11 O -1.019 7.019 12 C -0.772 4.772 13 C 0.321 3.679 14 O -0.468 6.468 15 N -0.323 5.323 16 C -0.077 4.077 17 C -0.216 4.216 18 C -0.199 4.199 19 H 0.105 0.895 20 H 0.211 0.789 21 H 0.211 0.789 22 H 0.263 0.737 23 H 0.130 0.870 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.134 0.866 27 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.361 -12.622 0.093 16.982 hybrid contribution 0.930 0.900 -0.001 1.294 sum 12.291 -11.721 0.091 16.984 Atomic orbital electron populations 1.70116 1.09224 1.31941 1.40715 1.26198 0.95376 1.05776 0.87758 0.85053 0.79242 0.74230 0.80068 1.17831 1.19338 1.16045 1.30705 1.07371 1.11201 1.67092 0.84620 1.03043 0.75846 0.76235 0.72724 1.93271 1.72995 1.87899 1.47726 1.93272 1.73010 1.87894 1.47699 1.30738 1.22250 1.07856 1.16387 1.19825 0.86543 0.86472 0.75078 1.90821 1.16348 1.87730 1.51903 1.45040 1.10516 1.03601 1.73131 1.21825 0.97926 0.79137 1.08769 1.23540 1.03950 1.00390 0.93724 1.23505 1.02016 0.98188 0.96239 0.89527 0.78853 0.78880 0.73650 0.86998 0.87024 0.87065 0.86580 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.41 13.03 21.45 0.28 -55.13 15 2 C 0.06 3.46 5.46 84.65 0.46 3.92 15 3 Si 1.00 40.83 29.54 68.60 2.03 42.86 15 4 H -0.25 -9.79 7.11 99.48 0.71 -9.09 15 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 15 6 H -0.24 -8.70 7.11 99.48 0.71 -7.99 15 7 C -1.03 -55.51 9.32 67.73 0.63 -54.88 15 8 H 0.14 6.02 7.81 -2.91 -0.02 5.99 15 9 S 2.53 139.59 3.61 -56.49 -0.20 139.39 15 10 O -1.02 -65.16 17.85 -127.64 -2.28 -67.43 15 11 O -1.02 -65.15 17.85 -127.64 -2.28 -67.43 15 12 C -0.64 -22.32 6.46 71.24 0.46 -21.86 15 13 C 0.53 19.93 7.85 87.66 0.69 20.62 15 14 O -0.59 -28.82 15.43 -3.04 -0.05 -28.87 15 15 N -0.67 -16.80 5.57 -442.54 -2.46 -19.26 15 16 C 0.03 0.67 6.43 44.99 0.29 0.96 15 17 C -0.18 -2.72 10.46 30.59 0.32 -2.40 15 18 C -0.16 -2.24 10.45 30.59 0.32 -1.92 15 19 H 0.29 16.53 8.31 -92.71 -0.77 15.76 15 20 H 0.19 4.97 8.14 -2.39 -0.02 4.95 15 21 H 0.19 4.97 8.14 -2.39 -0.02 4.95 15 22 H 0.42 6.68 8.83 -92.71 -0.82 5.87 15 23 H 0.11 3.23 7.40 -2.38 -0.02 3.22 15 24 H 0.11 1.42 8.14 -2.39 -0.02 1.40 15 25 H 0.11 1.53 8.14 -2.38 -0.02 1.51 15 26 H 0.12 1.36 8.14 -2.39 -0.02 1.34 15 27 H 0.12 1.20 8.14 -2.38 -0.02 1.18 15 Total: -1.00 -90.85 261.85 -1.42 -92.27 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.37 Total: 19.17 kcal Atomic # 6 Polarization: -58.73 SS G_CDS: 3.17 Total: -55.56 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -2.18 Total: -74.39 kcal Atomic # 8 Polarization: -159.13 SS G_CDS: -4.60 Total: -163.73 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: 139.59 SS G_CDS: -0.20 Total: 139.39 kcal Total: -90.85 -1.42 -92.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300792897.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.863 kcal (2) G-P(sol) polarization free energy of solvation -90.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds