Wall clock time and date at job start Mon Mar 30 2020 03:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13612 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39729 * 120.10445 * 85.88745 * 3 2 1 5 5 C 1.38023 * 120.02851 * 179.97438 * 4 3 2 6 6 C 1.38191 * 120.24916 * 359.97438 * 5 4 3 7 7 N 1.48022 * 119.88929 * 179.97438 * 6 5 4 8 8 O 1.31696 * 120.00197 * 6.42169 * 7 6 5 9 9 O 1.31701 * 119.99485 * 186.41653 * 7 6 5 10 10 C 1.39170 * 120.21544 * 0.02599 * 6 5 4 11 11 N 1.39283 * 120.01868 * 179.97438 * 10 6 5 12 12 C 1.32640 * 120.00278 * 174.35454 * 11 10 6 13 13 H 1.07993 * 120.00041 * 5.00447 * 12 11 10 14 14 C 1.46807 * 119.99743 * 185.00381 * 12 11 10 15 15 N 1.29326 * 119.99358 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00454 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47173 * 89.99875 * 16 14 12 18 18 H 1.48498 * 109.47457 * 210.00165 * 16 14 12 19 19 H 1.48496 * 109.47079 * 330.00314 * 16 14 12 20 20 C 1.38854 * 119.96913 * 0.24784 * 10 6 5 21 21 H 1.08002 * 119.98619 * 359.97438 * 4 3 2 22 22 H 1.07997 * 119.87243 * 179.97438 * 5 4 3 23 23 H 0.97003 * 119.99811 * 354.63153 * 11 10 6 24 24 H 0.97004 * 119.99775 * 179.97438 * 15 14 12 25 25 H 1.07993 * 120.12883 * 179.72255 * 20 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2690 -0.0857 -1.2057 5 6 4.6492 -0.0845 -1.2039 6 6 5.3437 0.0026 -0.0124 7 7 6.8239 0.0027 -0.0197 8 8 7.4768 0.0477 -1.1626 9 8 7.4879 -0.0420 1.1168 10 6 4.6560 0.0891 1.1944 11 7 5.3602 0.1761 2.3930 12 6 4.7091 0.3710 3.5321 13 1 3.6293 0.3815 3.5419 14 6 5.4566 0.5725 4.7795 15 7 4.8217 0.7630 5.8900 16 14 7.3243 0.5536 4.7627 17 1 7.8312 1.9297 4.5281 18 1 7.8262 0.0573 6.0692 19 1 7.8006 -0.3410 3.6774 20 6 3.2675 0.0828 1.2035 21 1 2.7305 -0.1535 -2.1394 22 1 5.1884 -0.1517 -2.1372 23 1 6.3271 0.0982 2.3942 24 1 5.3155 0.8957 6.7143 25 1 2.7313 0.1453 2.1388 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302746876.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:47 Heat of formation + Delta-G solvation = 59.116240 kcal Electronic energy + Delta-G solvation = -15319.447542 eV Core-core repulsion = 12494.776665 eV Total energy + Delta-G solvation = -2824.670877 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.24341 -38.63205 -37.65346 -36.75207 -35.99892 -33.39583 -32.03726 -31.11673 -27.38320 -26.73840 -23.68472 -23.07891 -21.37305 -20.29758 -18.51917 -17.89435 -17.64573 -17.00123 -16.38155 -15.88342 -15.45716 -15.28189 -14.81084 -14.73164 -14.57492 -14.48111 -13.72145 -13.44527 -13.41694 -13.17760 -12.41088 -12.33145 -12.08126 -11.71574 -10.65584 -10.62598 -10.37443 -10.18519 -9.93384 -9.49991 -6.32922 -1.18748 0.43282 0.57142 0.84462 1.11044 1.20137 1.76387 1.77260 1.90907 1.97907 2.15966 2.19183 3.10204 3.18430 3.46438 3.78871 4.15857 4.38481 4.44557 4.54502 4.74091 4.98381 5.04778 5.46117 5.61416 5.67013 5.99071 6.06935 6.70583 6.74664 6.97342 7.82893 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.020548 B = 0.010488 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.335987 B = 2669.129547 C = 4016.919577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C 0.303 3.697 3 C -0.108 4.108 4 C -0.055 4.055 5 C -0.126 4.126 6 C 0.026 3.974 7 N -0.048 5.048 8 O -0.611 6.611 9 O -0.584 6.584 10 C -0.057 4.057 11 N -0.381 5.381 12 C 0.039 3.961 13 H 0.216 0.784 14 C 0.021 3.979 15 N -0.593 5.593 16 Si 0.906 3.094 17 H -0.246 1.246 18 H -0.196 1.196 19 H -0.269 1.269 20 C 0.027 3.973 21 H 0.152 0.848 22 H 0.109 0.891 23 H 0.418 0.582 24 H 0.362 0.638 25 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.473 1.155 13.037 15.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.162 5.162 2 C -0.009 4.009 3 C -0.117 4.117 4 C -0.080 4.080 5 C -0.147 4.147 6 C -0.106 4.106 7 N 0.258 4.742 8 O -0.687 6.687 9 O -0.653 6.653 10 C -0.172 4.172 11 N 0.011 4.989 12 C -0.133 4.133 13 H 0.232 0.768 14 C -0.222 4.222 15 N -0.215 5.215 16 Si 0.724 3.276 17 H -0.169 1.169 18 H -0.117 1.117 19 H -0.195 1.195 20 C 0.005 3.995 21 H 0.170 0.830 22 H 0.127 0.873 23 H 0.280 0.720 24 H 0.180 0.820 25 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.438 1.149 13.009 16.112 hybrid contribution 2.504 -0.064 -0.374 2.532 sum -6.934 1.085 12.635 14.453 Atomic orbital electron populations 1.81222 1.12727 1.13404 1.08884 1.25329 0.91863 0.91454 0.92223 1.14994 0.83476 1.19196 0.94027 1.20649 0.90729 0.98902 0.97692 1.20006 0.94225 1.05239 0.95188 1.19681 0.77263 1.17939 0.95680 1.48159 1.01602 1.25506 0.98967 1.95767 1.72184 1.83720 1.17021 1.95167 1.69357 1.83450 1.17308 1.16556 0.91607 1.27336 0.81655 1.43942 1.16463 1.32433 1.06091 1.24616 1.01006 1.04253 0.83470 0.76807 1.27726 1.04797 0.96323 0.93352 1.68420 1.44545 1.06912 1.01628 0.86007 0.75170 0.82994 0.83454 1.16946 1.11664 1.19459 1.20788 0.88377 0.91320 0.99040 0.83032 0.87275 0.72039 0.81968 0.80327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -15.08 18.54 19.00 0.35 -14.73 15 2 C 0.30 8.53 15.33 88.33 1.35 9.89 15 3 C -0.11 -3.15 5.73 -21.38 -0.12 -3.27 15 4 C -0.05 -1.79 9.75 22.58 0.22 -1.57 15 5 C -0.13 -5.54 9.56 22.21 0.21 -5.32 15 6 C 0.03 1.32 6.90 36.59 0.25 1.57 15 7 N -0.05 -3.16 4.98 -45.95 -0.23 -3.39 15 8 O -0.61 -45.67 19.15 3.52 0.07 -45.60 15 9 O -0.58 -38.57 15.88 3.51 0.06 -38.52 15 10 C -0.06 -2.19 6.58 38.33 0.25 -1.94 15 11 N -0.38 -13.66 5.04 -180.58 -0.91 -14.57 15 12 C 0.04 0.92 10.30 86.81 0.89 1.82 15 13 H 0.22 3.34 5.84 -2.91 -0.02 3.32 15 14 C 0.02 0.46 5.70 87.30 0.50 0.96 15 15 N -0.59 -10.43 13.88 23.26 0.32 -10.11 15 16 Si 0.91 23.11 27.90 68.60 1.91 25.02 15 17 H -0.25 -6.90 7.11 99.48 0.71 -6.20 15 18 H -0.20 -3.70 7.11 99.48 0.71 -3.00 15 19 H -0.27 -10.09 6.14 99.48 0.61 -9.48 15 20 C 0.03 0.75 8.99 22.71 0.20 0.95 15 21 H 0.15 3.95 8.06 -2.91 -0.02 3.93 15 22 H 0.11 5.21 7.58 -2.91 -0.02 5.19 15 23 H 0.42 18.16 2.17 -111.96 -0.24 17.91 15 24 H 0.36 4.58 8.26 -92.71 -0.77 3.81 15 25 H 0.18 3.14 5.97 -2.91 -0.02 3.12 15 Total: -1.00 -86.47 242.45 6.27 -80.19 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.94 Total: 18.62 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 3.76 Total: 3.09 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: -0.46 Total: -42.80 kcal Atomic # 8 Polarization: -84.25 SS G_CDS: 0.12 Total: -84.12 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: 1.91 Total: 25.02 kcal Total: -86.47 6.27 -80.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302746876.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.311 kcal (2) G-P(sol) polarization free energy of solvation -86.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds