Wall clock time and date at job start Mon Mar 30 2020 03:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86804 * 119.99977 * 2 1 4 4 H 1.48500 * 109.46970 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47269 * 299.99905 * 3 2 1 6 6 H 1.48497 * 109.47226 * 60.00363 * 3 2 1 7 7 C 1.40047 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.46378 * 119.99995 * 359.97438 * 7 2 1 10 10 O 1.21688 * 119.99638 * 5.14092 * 9 7 2 11 11 N 1.34772 * 119.99961 * 185.13660 * 9 7 2 12 12 C 1.45678 * 120.61164 * 174.99280 * 11 9 7 13 13 C 1.54544 * 118.55157 * 137.29207 * 12 11 9 14 14 S 1.79679 * 113.19812 * 313.49402 * 13 12 11 15 15 S 2.07055 * 103.43397 * 84.53971 * 14 13 12 16 16 C 1.74940 * 103.22840 * 293.06029 * 15 14 13 17 17 C 1.43829 * 120.68076 * 354.88497 * 11 9 7 18 18 H 0.96993 * 119.99972 * 0.02562 * 1 2 3 19 19 H 1.08997 * 107.71994 * 14.89328 * 12 11 9 20 20 H 1.09005 * 107.49467 * 259.50361 * 12 11 9 21 21 H 1.09002 * 108.71470 * 192.57038 * 13 12 11 22 22 H 1.08996 * 108.71581 * 74.41719 * 13 12 11 23 23 H 1.09000 * 108.46254 * 185.29084 * 16 15 14 24 24 H 1.09008 * 108.45695 * 302.79895 * 16 15 14 25 25 H 1.08999 * 109.77980 * 162.77697 * 17 11 9 26 26 H 1.08993 * 109.82605 * 41.99346 * 17 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8820 2.3965 -1.2124 6 1 1.8821 2.3964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0619 -2.4826 -0.0945 11 7 1.9450 -3.6453 0.1034 12 6 1.2258 -4.9074 0.2140 13 6 1.7299 -6.1188 -0.6024 14 16 2.0959 -5.7154 -2.3147 15 16 4.0307 -4.9824 -2.2331 16 6 3.8561 -3.4908 -1.3358 17 6 3.3831 -3.6673 0.1051 18 1 -0.4850 0.8400 -0.0004 19 1 0.1898 -4.7249 -0.0715 20 1 1.2272 -5.1943 1.2656 21 1 0.9665 -6.8966 -0.5817 22 1 2.6345 -6.5050 -0.1329 23 1 4.8195 -2.9811 -1.3227 24 1 3.1387 -2.8566 -1.8567 25 1 3.7370 -4.6216 0.4952 26 1 3.7645 -2.8529 0.7209 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306279868.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:23 Heat of formation + Delta-G solvation = -52.071290 kcal Electronic energy + Delta-G solvation = -12903.857466 eV Core-core repulsion = 10620.269207 eV Total energy + Delta-G solvation = -2283.588259 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 233.028 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.17330 -36.80570 -34.73620 -33.13871 -30.74560 -28.42327 -25.04486 -24.24602 -21.21590 -19.67043 -18.52880 -17.82627 -16.99793 -16.89997 -16.25123 -15.88178 -15.45710 -14.65029 -14.20753 -14.14063 -13.75757 -13.60849 -13.07701 -12.94827 -12.79920 -12.62563 -12.15647 -11.99742 -11.76126 -11.33419 -10.97219 -9.88554 -9.63769 -9.26188 -8.75410 -8.32779 -6.87321 -1.53728 0.71416 1.30538 1.38395 1.39858 1.56533 2.20589 2.40532 2.74257 3.52973 3.63055 3.92136 4.05211 4.15229 4.21337 4.53445 4.59932 4.80791 4.84555 4.99974 5.32384 5.72507 6.10596 6.32635 6.84989 7.34288 8.41994 8.63492 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.036810 B = 0.009348 C = 0.008216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.480186 B = 2994.470668 C = 3407.115129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.992 3.008 4 H -0.242 1.242 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.558 4.558 8 H 0.096 0.904 9 C 0.546 3.454 10 O -0.627 6.627 11 N -0.633 5.633 12 C 0.110 3.890 13 C -0.087 4.087 14 S -0.200 6.200 15 S -0.096 6.096 16 C -0.151 4.151 17 C 0.132 3.868 18 H 0.274 0.726 19 H 0.047 0.953 20 H 0.070 0.930 21 H 0.145 0.855 22 H 0.117 0.883 23 H 0.141 0.859 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.247 -8.012 0.174 13.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.812 3.188 4 H -0.164 1.164 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.594 4.594 8 H 0.114 0.886 9 C 0.353 3.647 10 O -0.513 6.513 11 N -0.368 5.368 12 C -0.017 4.017 13 C -0.241 4.241 14 S -0.080 6.080 15 S 0.024 5.976 16 C -0.306 4.306 17 C 0.005 3.995 18 H 0.084 0.916 19 H 0.066 0.934 20 H 0.088 0.912 21 H 0.163 0.837 22 H 0.135 0.865 23 H 0.159 0.841 24 H 0.088 0.912 25 H 0.117 0.883 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.693 -8.515 -1.234 12.961 hybrid contribution -0.555 1.510 1.366 2.110 sum 9.138 -7.005 0.131 11.515 Atomic orbital electron populations 1.70189 1.09603 1.28900 1.36411 1.26975 0.95431 1.04964 0.91266 0.85040 0.79726 0.75698 0.78355 1.16426 1.19876 1.19426 1.21461 0.94855 0.89243 1.53820 0.88617 1.18611 0.86505 0.83780 0.75836 1.90560 1.16778 1.87120 1.56852 1.47087 1.06231 1.05254 1.78250 1.21195 0.97107 0.84558 0.98835 1.24406 1.07503 1.00517 0.91632 1.89120 1.23027 1.79586 1.16301 1.87855 1.08941 1.27197 1.73641 1.23860 1.07188 0.98665 1.00935 1.21100 0.81136 1.03843 0.93407 0.91625 0.93410 0.91247 0.83731 0.86491 0.84119 0.91227 0.88286 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.49 11.84 21.84 0.26 -49.23 15 2 C 0.03 1.56 5.50 85.30 0.47 2.03 15 3 Si 0.99 39.61 29.56 68.60 2.03 41.63 15 4 H -0.24 -8.70 7.11 99.48 0.71 -7.99 15 5 H -0.27 -10.76 7.11 99.48 0.71 -10.06 15 6 H -0.27 -10.40 7.11 99.48 0.71 -9.70 15 7 C -0.56 -29.85 8.16 24.83 0.20 -29.65 15 8 H 0.10 4.49 6.06 -2.91 -0.02 4.47 15 9 C 0.55 30.43 7.08 86.36 0.61 31.04 15 10 O -0.63 -41.37 14.41 -4.31 -0.06 -41.43 15 11 N -0.63 -27.00 2.51 -833.13 -2.09 -29.10 15 12 C 0.11 4.01 5.80 87.06 0.51 4.51 15 13 C -0.09 -2.36 5.77 72.51 0.42 -1.95 15 14 S -0.20 -6.59 22.23 -20.26 -0.45 -7.04 15 15 S -0.10 -2.82 22.25 -20.26 -0.45 -3.27 15 16 C -0.15 -4.83 5.23 71.87 0.38 -4.46 15 17 C 0.13 4.34 5.05 86.77 0.44 4.78 15 18 H 0.27 14.98 8.29 -92.71 -0.77 14.21 15 19 H 0.05 2.12 6.91 -2.39 -0.02 2.11 15 20 H 0.07 2.25 8.14 -2.38 -0.02 2.23 15 21 H 0.14 3.18 8.14 -2.58 -0.02 3.16 15 22 H 0.12 2.56 7.77 -2.59 -0.02 2.54 15 23 H 0.14 3.68 8.14 -4.31 -0.04 3.65 15 24 H 0.07 2.85 7.03 -4.31 -0.03 2.82 15 25 H 0.10 2.60 7.22 -2.39 -0.02 2.58 15 26 H 0.09 2.96 6.71 -2.39 -0.02 2.95 15 Total: -1.00 -72.57 241.12 3.41 -69.17 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 1.16 Total: 12.97 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 3.02 Total: 6.31 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -1.83 Total: -78.33 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -0.06 Total: -41.43 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.63 kcal Atomic # 16 Polarization: -9.41 SS G_CDS: -0.90 Total: -10.31 kcal Total: -72.57 3.41 -69.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306279868.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.094 kcal (2) G-P(sol) polarization free energy of solvation -72.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds