Wall clock time and date at job start Mon Mar 30 2020 03:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30704 * 1 3 3 Si 1.86798 * 119.99651 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00128 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99687 * 3 2 1 7 7 C 1.40242 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99377 * 179.97438 * 7 2 1 9 9 C 1.39877 * 120.00430 * 0.02562 * 7 2 1 10 10 N 1.31888 * 125.54067 * 359.68819 * 9 7 2 11 11 C 1.30480 * 115.69151 * 179.81713 * 10 9 7 12 12 Br 1.89098 * 122.12335 * 180.22088 * 11 10 9 13 13 C 1.34995 * 115.75723 * 0.48332 * 11 10 9 14 14 S 1.71040 * 109.22771 * 359.73842 * 13 11 10 15 15 H 0.96996 * 120.00349 * 0.02562 * 1 2 3 16 16 H 1.07992 * 125.38826 * 179.76551 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 1.2760 2.7464 -0.0006 5 1 3.0947 1.6965 1.2124 6 1 3.0947 1.6963 -1.2125 7 6 2.0082 -1.2146 0.0005 8 1 3.0882 -1.2145 0.0001 9 6 1.3089 -2.4260 0.0005 10 7 -0.0038 -2.5534 0.0059 11 6 -0.4533 -3.7783 0.0010 12 35 -2.3031 -4.1706 0.0012 13 6 0.4860 -4.7478 0.0014 14 16 2.0379 -4.0286 0.0012 15 1 -0.4850 0.8400 -0.0004 16 1 0.2889 -5.8096 0.0015 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306289567.mol2 16 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:34 Heat of formation + Delta-G solvation = 7.721633 kcal Electronic energy + Delta-G solvation = -7555.183886 eV Core-core repulsion = 5786.050862 eV Total energy + Delta-G solvation = -1769.133024 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 232.920 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.52229 -35.74714 -32.34525 -30.52433 -28.30671 -24.49706 -21.17072 -18.89207 -18.14432 -16.78609 -15.78868 -14.97378 -14.55878 -14.23160 -13.09946 -12.98027 -12.67931 -12.14721 -11.92219 -11.81116 -11.14760 -11.10498 -9.91757 -9.83134 -9.41604 -8.64734 -6.72783 0.40954 0.53650 1.20095 1.45495 1.53103 1.61030 1.91003 2.18873 2.31719 3.14123 4.50887 4.82840 4.97483 5.26411 5.92094 6.14373 6.46546 7.68511 8.17533 Molecular weight = 232.92amu Principal moments of inertia in cm(-1) A = 0.043401 B = 0.010855 C = 0.008710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.986946 B = 2578.729366 C = 3213.874190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.023 3.977 3 Si 1.008 2.992 4 H -0.267 1.267 5 H -0.250 1.250 6 H -0.250 1.250 7 C -0.390 4.390 8 H 0.118 0.882 9 C 0.192 3.808 10 N -0.559 5.559 11 C 0.121 3.879 12 Br -0.026 7.026 13 C -0.402 4.402 14 S -0.036 6.036 15 H 0.294 0.706 16 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 -0.954 -0.012 1.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.205 4.205 3 Si 0.826 3.174 4 H -0.191 1.191 5 H -0.174 1.174 6 H -0.174 1.174 7 C -0.433 4.433 8 H 0.136 0.864 9 C -0.058 4.058 10 N -0.281 5.281 11 C -0.099 4.099 12 Br 0.057 6.943 13 C -0.548 4.548 14 S 0.219 5.781 15 H 0.106 0.894 16 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.548 -0.998 -0.005 1.139 hybrid contribution -0.590 0.094 -0.004 0.598 sum -1.139 -0.904 -0.009 1.454 Atomic orbital electron populations 1.70077 1.09605 1.31281 1.24958 1.27307 0.95851 1.04960 0.92353 0.84856 0.78385 0.73349 0.80856 1.19104 1.17393 1.17395 1.19669 0.96011 0.88381 1.39227 0.86443 1.24489 0.89499 0.95006 0.96795 1.67429 1.10885 1.18196 1.31602 1.21882 0.92206 0.91312 1.04504 1.96389 1.06720 1.93262 1.97971 1.24992 0.94686 1.02752 1.32376 1.82814 1.10729 1.05022 1.79487 0.89443 0.82093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.64 11.87 21.88 0.26 -37.38 13 2 C 0.02 1.07 5.50 85.35 0.47 1.53 13 3 Si 1.01 33.53 29.56 68.60 2.03 35.56 13 4 H -0.27 -8.53 7.11 99.48 0.71 -7.82 13 5 H -0.25 -7.91 7.11 99.48 0.71 -7.20 13 6 H -0.25 -7.91 7.11 99.48 0.71 -7.20 13 7 C -0.39 -19.32 9.40 23.15 0.22 -19.10 13 8 H 0.12 5.15 7.85 -2.91 -0.02 5.13 13 9 C 0.19 10.32 7.07 85.08 0.60 10.92 13 10 N -0.56 -31.51 8.76 -190.45 -1.67 -33.18 13 11 C 0.12 6.15 7.12 84.15 0.60 6.75 13 12 Br -0.03 -1.07 33.98 -20.37 -0.69 -1.76 13 13 C -0.40 -19.11 10.92 67.07 0.73 -18.37 13 14 S -0.04 -1.69 23.16 -56.49 -1.31 -3.00 13 15 H 0.29 13.39 8.29 -92.71 -0.77 12.62 13 16 H 0.16 6.83 8.06 -2.91 -0.02 6.81 13 Total: -1.00 -58.23 192.86 2.54 -55.69 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: 1.31 Total: 2.33 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 2.62 Total: -18.27 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -1.41 Total: -70.55 kcal Atomic # 14 Polarization: 33.53 SS G_CDS: 2.03 Total: 35.56 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -1.31 Total: -3.00 kcal Atomic # 35 Polarization: -1.07 SS G_CDS: -0.69 Total: -1.76 kcal Total: -58.23 2.54 -55.69 kcal The number of atoms in the molecule is 16 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306289567.mol2 16 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.412 kcal (2) G-P(sol) polarization free energy of solvation -58.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds