Wall clock time and date at job start Mon Mar 30 2020 03:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86797 * 120.00140 * 2 1 4 4 H 1.48499 * 109.47152 * 270.00414 * 3 2 1 5 5 H 1.48504 * 109.46851 * 30.00097 * 3 2 1 6 6 H 1.48494 * 109.47353 * 150.00109 * 3 2 1 7 7 C 1.40043 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99438 * 179.97438 * 7 2 1 9 9 C 1.41057 * 120.00357 * 359.97438 * 7 2 1 10 10 N 1.33758 * 119.88324 * 0.26575 * 9 7 2 11 11 C 1.31352 * 121.62445 * 180.31007 * 10 9 7 12 12 C 1.38874 * 121.21531 * 359.71203 * 11 10 9 13 13 C 1.38791 * 119.63254 * 359.97438 * 12 11 10 14 14 F 1.35098 * 120.75429 * 179.97438 * 13 12 11 15 15 C 1.39283 * 118.49037 * 0.02562 * 13 12 11 16 16 O 1.35632 * 120.59708 * 179.97438 * 15 13 12 17 17 C 1.42905 * 116.99708 * 90.00401 * 16 15 13 18 18 F 1.39897 * 109.46886 * 299.99557 * 17 16 15 19 19 F 1.39898 * 109.47456 * 59.99775 * 17 16 15 20 20 H 0.97001 * 119.99688 * 359.97438 * 1 2 3 21 21 H 1.07999 * 119.39358 * 179.72096 * 11 10 9 22 22 H 1.08000 * 120.18530 * 179.97438 * 12 11 10 23 23 H 1.09001 * 109.47103 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 2.4892 2.0464 -1.4001 5 1 1.4391 2.6526 0.7001 6 1 3.5393 1.4401 0.7000 7 6 2.0079 -1.2128 -0.0005 8 1 3.0879 -1.2128 -0.0010 9 6 1.3026 -2.4344 -0.0005 10 7 -0.0350 -2.4317 -0.0054 11 6 -0.7260 -3.5488 0.0005 12 6 -0.0946 -4.7857 0.0061 13 6 1.2919 -4.8484 0.0049 14 9 1.9296 -6.0394 0.0108 15 6 2.0109 -3.6555 -0.0013 16 8 3.3672 -3.6669 -0.0021 17 6 4.0151 -3.6785 -1.2759 18 9 3.6291 -4.8210 -1.9849 19 9 3.6483 -2.5366 -1.9960 20 1 -0.4850 0.8401 0.0004 21 1 -1.8051 -3.5045 0.0008 22 1 -0.6792 -5.6938 0.0113 23 1 5.0957 -3.6874 -1.1337 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306577302.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:33 Heat of formation + Delta-G solvation = -165.091252 kcal Electronic energy + Delta-G solvation = -16649.894192 eV Core-core repulsion = 13241.351457 eV Total energy + Delta-G solvation = -3408.542735 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.26030 -47.92909 -46.36276 -38.58026 -36.49203 -33.86140 -30.21244 -29.54906 -26.19939 -24.86506 -21.82986 -21.57198 -18.01493 -17.88306 -17.33134 -17.04057 -16.17428 -15.51426 -14.96522 -14.79325 -14.42763 -13.43107 -13.21363 -12.98421 -12.96970 -12.76392 -12.54975 -11.89642 -11.67029 -11.60993 -11.30552 -11.24897 -10.78181 -10.61174 -9.77401 -9.55344 -8.11574 -7.94049 -7.82800 -6.70957 -4.81619 2.22631 2.55245 2.97920 3.01498 3.05985 3.77717 3.99103 4.44547 4.53326 5.25621 5.26226 5.55781 5.61971 5.90965 6.10955 6.45234 6.68141 6.87349 7.11024 7.17853 7.54389 7.87233 8.00252 8.41424 8.66409 9.76582 9.99707 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.027452 B = 0.012342 C = 0.009125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.734282 B = 2268.097275 C = 3067.679583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.062 3.938 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.379 4.379 8 H 0.095 0.905 9 C 0.260 3.740 10 N -0.477 5.477 11 C 0.162 3.838 12 C -0.355 4.355 13 C 0.167 3.833 14 F -0.148 7.148 15 C -0.151 4.151 16 O -0.305 6.305 17 C 0.384 3.616 18 F -0.218 7.218 19 F -0.202 7.202 20 H 0.280 0.720 21 H 0.135 0.865 22 H 0.112 0.888 23 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.785 -1.258 -1.058 4.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.166 4.166 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.408 4.408 8 H 0.113 0.887 9 C 0.138 3.862 10 N -0.190 5.190 11 C -0.010 4.010 12 C -0.379 4.379 13 C 0.142 3.858 14 F -0.127 7.127 15 C -0.200 4.200 16 O -0.222 6.222 17 C 0.294 3.706 18 F -0.200 7.200 19 F -0.184 7.184 20 H 0.091 0.909 21 H 0.152 0.848 22 H 0.130 0.870 23 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.383 -0.299 -0.944 3.524 hybrid contribution 0.717 -0.529 -0.383 0.970 sum 4.099 -0.828 -1.327 4.388 Atomic orbital electron populations 1.70131 1.07455 1.28772 1.25092 1.26247 0.95077 1.01772 0.93535 0.86159 0.80546 0.79709 0.79648 1.18971 1.19760 1.18080 1.19750 0.95145 0.88890 1.36965 0.88722 1.18614 0.88094 0.90646 0.88873 1.68866 1.06121 1.26467 1.17578 1.22552 0.99358 0.87616 0.91428 1.21289 0.91652 0.99890 1.25093 1.18177 0.90895 0.79121 0.97615 1.91376 1.82676 1.45025 1.93631 1.19407 0.81304 0.92404 1.26842 1.86641 1.18530 1.92236 1.24827 1.23733 0.96950 0.71594 0.78297 1.93011 1.93526 1.52939 1.80498 1.93078 1.93784 1.51878 1.79619 0.90894 0.84783 0.86983 0.83158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.45 11.46 55.55 0.64 -16.81 14 2 C 0.06 1.50 5.50 -17.33 -0.10 1.40 14 3 Si 0.92 17.77 29.56 -169.99 -5.02 12.75 14 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 14 5 H -0.27 -5.11 7.11 56.52 0.40 -4.70 14 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 14 7 C -0.38 -9.85 7.94 -37.84 -0.30 -10.15 14 8 H 0.09 2.36 6.73 -52.48 -0.35 2.01 14 9 C 0.26 7.03 6.45 -84.85 -0.55 6.48 14 10 N -0.48 -12.70 7.86 -11.04 -0.09 -12.78 14 11 C 0.16 3.76 11.17 -17.52 -0.20 3.56 14 12 C -0.36 -8.07 10.10 -39.14 -0.40 -8.47 14 13 C 0.17 4.10 7.13 -38.99 -0.28 3.82 14 14 F -0.15 -3.46 16.96 2.25 0.04 -3.42 14 15 C -0.15 -3.87 5.37 -38.08 -0.20 -4.07 14 16 O -0.30 -7.10 9.41 -18.60 -0.17 -7.27 14 17 C 0.38 7.51 6.35 101.05 0.64 8.15 14 18 F -0.22 -4.52 16.77 2.25 0.04 -4.48 14 19 F -0.20 -4.35 15.48 2.25 0.03 -4.32 14 20 H 0.28 6.26 8.29 -40.82 -0.34 5.92 14 21 H 0.13 2.63 8.06 -52.49 -0.42 2.20 14 22 H 0.11 2.22 8.06 -52.49 -0.42 1.80 14 23 H 0.15 2.08 8.14 -51.93 -0.42 1.65 14 LS Contribution 228.11 15.07 3.44 3.44 Total: -1.00 -29.27 228.11 -3.23 -32.50 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -0.76 Total: -0.33 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.38 Total: 0.73 kcal Atomic # 7 Polarization: -30.14 SS G_CDS: 0.55 Total: -29.59 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.17 Total: -7.27 kcal Atomic # 9 Polarization: -12.33 SS G_CDS: 0.11 Total: -12.22 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.02 Total: 12.75 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.27 -3.23 -32.50 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306577302.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.593 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds