Wall clock time and date at job start Mon Mar 30 2020 03:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30766 * 1 3 3 Si 1.86810 * 119.99931 * 2 1 4 4 H 1.48497 * 109.46734 * 239.99737 * 3 2 1 5 5 H 1.48493 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46851 * 119.99849 * 3 2 1 7 7 C 1.39999 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00205 * 180.02562 * 7 2 1 9 9 C 1.41337 * 119.99571 * 0.02562 * 7 2 1 10 10 C 1.40558 * 119.77041 * 180.27106 * 9 7 2 11 11 C 1.38600 * 118.94984 * 180.22501 * 10 9 7 12 12 O 1.35809 * 120.76822 * 179.77930 * 11 10 9 13 13 C 1.42903 * 117.00308 * 359.72507 * 12 11 10 14 14 F 1.39904 * 109.46926 * 59.99393 * 13 12 11 15 15 F 1.39901 * 109.46899 * 299.99936 * 13 12 11 16 16 C 1.39799 * 118.46326 * 359.51169 * 11 10 9 17 17 F 1.35099 * 120.28099 * 180.27258 * 16 11 10 18 18 C 1.38828 * 119.43857 * 0.24711 * 16 11 10 19 19 N 1.31479 * 121.03030 * 0.02562 * 18 16 11 20 20 H 0.97001 * 119.99578 * 0.02562 * 1 2 3 21 21 H 1.08000 * 120.52862 * 359.97438 * 10 9 7 22 22 H 1.09002 * 109.47382 * 179.97438 * 13 12 11 23 23 H 1.08002 * 119.48966 * 180.02562 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 3.0954 1.6964 -1.2125 5 1 1.2767 2.7465 -0.0006 6 1 3.0954 1.6965 1.2125 7 6 2.0077 -1.2124 0.0005 8 1 3.0876 -1.2124 0.0010 9 6 1.3009 -2.4364 0.0005 10 6 2.0085 -3.6509 0.0069 11 6 1.2984 -4.8411 0.0020 12 8 1.9445 -6.0356 0.0033 13 6 3.3731 -6.0006 0.0038 14 9 3.8227 -5.3286 1.1456 15 9 3.8235 -5.3309 -1.1390 16 6 -0.0984 -4.7836 0.0014 17 9 -0.8271 -5.9212 0.0023 18 6 -0.7304 -3.5475 0.0005 19 7 -0.0358 -2.4311 -0.0004 20 1 -0.4849 0.8401 -0.0004 21 1 3.0885 -3.6565 0.0113 22 1 3.7616 -7.0190 0.0053 23 1 -1.8095 -3.5021 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306584667.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:39 Heat of formation + Delta-G solvation = -181.234821 kcal Electronic energy + Delta-G solvation = -16224.215339 eV Core-core repulsion = 12814.972566 eV Total energy + Delta-G solvation = -3409.242773 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.23280 -49.30740 -48.25903 -40.67817 -38.88488 -35.52624 -32.13099 -31.61047 -27.66440 -27.15922 -23.96225 -23.43396 -20.53134 -19.37388 -18.85508 -18.65739 -18.00722 -17.45998 -16.84772 -16.45554 -16.16754 -15.24165 -15.16133 -14.73517 -14.73500 -14.54553 -14.34760 -14.03443 -13.73058 -13.55472 -12.97119 -12.77904 -12.71715 -12.42902 -11.86055 -11.20430 -9.96816 -9.85450 -9.54334 -8.48974 -6.70334 0.54590 0.71719 1.41272 1.51961 1.54713 1.65493 2.18699 2.59232 2.64201 3.55629 3.59558 3.63790 3.75511 4.03513 4.30947 4.43532 4.63497 5.07667 5.11001 5.24684 5.56850 5.99711 6.08696 6.50067 6.71853 7.86053 8.28324 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.027819 B = 0.009589 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.258544 B = 2919.215337 C = 3750.978820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.022 3.978 3 Si 0.995 3.005 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.257 1.257 7 C -0.437 4.437 8 H 0.096 0.904 9 C 0.231 3.769 10 C -0.330 4.330 11 C 0.134 3.866 12 O -0.331 6.331 13 C 0.405 3.595 14 F -0.212 7.212 15 F -0.212 7.212 16 C -0.145 4.145 17 F -0.156 7.156 18 C 0.134 3.866 19 N -0.502 5.502 20 H 0.288 0.712 21 H 0.127 0.873 22 H 0.244 0.756 23 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.597 -4.910 0.007 7.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.202 4.202 3 Si 0.814 3.186 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.181 1.181 7 C -0.467 4.467 8 H 0.115 0.885 9 C 0.109 3.891 10 C -0.353 4.353 11 C 0.084 3.916 12 O -0.248 6.248 13 C 0.316 3.684 14 F -0.193 7.193 15 F -0.193 7.193 16 C -0.171 4.171 17 F -0.136 7.136 18 C -0.035 4.035 19 N -0.216 5.216 20 H 0.099 0.901 21 H 0.145 0.855 22 H 0.260 0.740 23 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.962 -4.143 0.007 6.465 hybrid contribution 0.667 -0.303 -0.001 0.732 sum 5.629 -4.447 0.005 7.173 Atomic orbital electron populations 1.70171 1.09015 1.30255 1.26461 1.27112 0.95862 1.04836 0.92393 0.85066 0.78617 0.74649 0.80304 1.18092 1.18792 1.18082 1.20086 0.95274 0.89991 1.41315 0.88547 1.18856 0.88493 0.92775 0.89008 1.22001 0.99990 0.91631 1.21703 1.18989 0.90811 0.84461 0.97289 1.86501 1.20790 1.29007 1.88505 1.24389 0.77424 0.95588 0.70979 1.93061 1.88940 1.84554 1.52792 1.93061 1.88913 1.84652 1.52721 1.17941 0.86124 0.83749 1.29263 1.91283 1.76964 1.48993 1.96311 1.23100 1.01012 0.85824 0.93583 1.68823 1.07652 1.25845 1.19245 0.90094 0.85526 0.74037 0.81825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.90 11.46 21.83 0.25 -37.65 14 2 C 0.02 1.07 5.50 85.28 0.47 1.54 14 3 Si 0.99 35.84 29.56 68.60 2.03 37.87 14 4 H -0.26 -8.96 7.11 99.48 0.71 -8.25 14 5 H -0.26 -8.95 7.11 99.48 0.71 -8.24 14 6 H -0.26 -8.96 7.11 99.48 0.71 -8.25 14 7 C -0.44 -22.98 9.14 23.46 0.21 -22.76 14 8 H 0.10 4.71 7.85 -2.91 -0.02 4.68 14 9 C 0.23 12.73 6.55 40.19 0.26 12.99 14 10 C -0.33 -16.57 8.05 22.92 0.18 -16.38 14 11 C 0.13 6.39 6.52 22.73 0.15 6.54 14 12 O -0.33 -12.99 10.35 -91.41 -0.95 -13.93 14 13 C 0.40 11.82 5.98 113.37 0.68 12.50 14 14 F -0.21 -7.10 15.61 44.97 0.70 -6.40 14 15 F -0.21 -7.10 15.65 44.97 0.70 -6.40 14 16 C -0.15 -7.06 7.38 22.79 0.17 -6.89 14 17 F -0.16 -7.12 17.17 44.97 0.77 -6.34 14 18 C 0.13 6.58 11.16 84.89 0.95 7.53 14 19 N -0.50 -27.67 7.85 -189.09 -1.48 -29.15 14 20 H 0.29 13.17 8.29 -92.71 -0.77 12.40 14 21 H 0.13 6.02 5.26 -2.91 -0.02 6.00 14 22 H 0.24 3.46 8.14 -2.39 -0.02 3.44 14 23 H 0.16 6.98 8.06 -2.91 -0.02 6.96 14 Total: -1.00 -64.57 226.84 6.37 -58.20 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.27 Total: 8.74 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 3.07 Total: -4.94 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -1.23 Total: -66.80 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.95 Total: -13.93 kcal Atomic # 9 Polarization: -21.31 SS G_CDS: 2.18 Total: -19.14 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Total: -64.57 6.37 -58.20 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306584667.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.032 kcal (2) G-P(sol) polarization free energy of solvation -64.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds