Wall clock time and date at job start Mon Mar 30 2020 03:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42095 * 108.58486 * 2 1 4 4 O 1.42103 * 108.57609 * 228.97196 * 2 1 3 5 5 C 1.81400 * 101.92406 * 114.49142 * 2 1 3 6 6 C 1.50704 * 115.54700 * 304.66372 * 5 2 1 7 7 O 1.21288 * 120.00144 * 136.04186 * 6 5 2 8 8 N 1.34778 * 119.99766 * 316.03826 * 6 5 2 9 9 C 1.37096 * 120.00208 * 175.08344 * 8 6 5 10 10 H 1.08003 * 119.99610 * 4.98449 * 9 8 6 11 11 C 1.38943 * 120.00224 * 184.98616 * 9 8 6 12 12 N 1.31414 * 120.00353 * 184.70153 * 11 9 8 13 13 Si 1.86797 * 120.00290 * 4.70683 * 11 9 8 14 14 H 1.48496 * 109.47701 * 94.30619 * 13 11 9 15 15 H 1.48500 * 109.47486 * 214.31293 * 13 11 9 16 16 H 1.48510 * 109.46771 * 334.30892 * 13 11 9 17 17 C 1.52999 * 117.50108 * 90.32583 * 5 2 1 18 18 C 1.52999 * 117.50511 * 158.98972 * 5 2 1 19 19 H 1.09002 * 109.46583 * 310.73788 * 1 2 3 20 20 H 1.08998 * 109.47010 * 70.73367 * 1 2 3 21 21 H 1.09003 * 109.47361 * 190.73890 * 1 2 3 22 22 H 0.97001 * 120.00140 * 354.80941 * 8 6 5 23 23 H 0.96996 * 120.00455 * 179.97438 * 12 11 9 24 24 H 1.09005 * 117.49973 * 215.00632 * 17 5 2 25 25 H 1.09000 * 117.49951 * 0.02656 * 17 5 2 26 26 H 1.08997 * 117.49207 * 359.97438 * 18 5 2 27 27 H 1.08995 * 117.50121 * 144.97293 * 18 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2669 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 1.5664 -0.0479 2.8029 7 8 1.0516 -0.7047 3.6830 8 7 1.5820 1.2972 2.8870 9 6 0.9289 1.9273 3.9146 10 1 0.4704 1.3454 4.7005 11 6 0.8567 3.3146 3.9449 12 7 0.3122 3.9219 4.9753 13 14 1.5335 4.3165 2.5210 14 1 0.4389 4.6196 1.5645 15 1 2.1059 5.5859 3.0368 16 1 2.5942 3.5402 1.8297 17 6 2.3423 -2.2567 1.6802 18 6 3.5743 -1.3566 1.8044 19 1 -0.3632 0.6707 0.7787 20 1 -0.3633 0.3391 -0.9701 21 1 -0.3634 -1.0097 0.1915 22 1 2.0586 1.8192 2.2228 23 1 0.2621 4.8903 4.9966 24 1 1.9932 -2.7597 2.5820 25 1 2.2186 -2.8151 0.7523 26 1 4.2604 -1.3233 0.9582 27 1 4.0358 -1.2672 2.7877 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306595974.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:17 Heat of formation + Delta-G solvation = -71.406347 kcal Electronic energy + Delta-G solvation = -15131.409244 eV Core-core repulsion = 12404.229683 eV Total energy + Delta-G solvation = -2727.179561 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.07419 -37.12991 -36.01901 -35.84381 -34.07682 -31.82451 -29.42610 -26.13291 -23.27037 -22.51595 -20.10753 -19.07158 -18.18837 -17.21019 -16.06395 -15.87168 -15.38296 -15.02993 -14.17870 -13.78442 -13.58194 -13.07020 -13.04321 -12.87616 -12.38276 -12.06473 -11.94955 -11.62296 -11.42232 -11.26644 -11.02198 -10.71844 -10.46407 -10.24226 -10.07512 -9.71004 -8.82100 -8.33909 -6.46133 -3.98525 0.07933 2.64323 3.04087 3.12667 3.18636 3.25469 3.65844 3.75438 4.06173 4.10824 4.31228 4.63166 4.81125 4.94088 5.12719 5.19372 5.27917 5.52671 5.83899 5.85332 5.89517 6.13571 7.41680 7.94162 8.40891 8.75936 9.25111 9.58058 10.64281 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.030943 B = 0.011547 C = 0.009648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.679249 B = 2424.394891 C = 2901.439623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 2.441 3.559 3 O -0.934 6.934 4 O -0.943 6.943 5 C -0.654 4.654 6 C 0.487 3.513 7 O -0.562 6.562 8 N -0.579 5.579 9 C -0.312 4.312 10 H 0.124 0.876 11 C 0.051 3.949 12 N -0.866 5.866 13 Si 0.860 3.140 14 H -0.265 1.265 15 H -0.273 1.273 16 H -0.248 1.248 17 C -0.098 4.098 18 C -0.108 4.108 19 H 0.138 0.862 20 H 0.129 0.871 21 H 0.132 0.868 22 H 0.385 0.615 23 H 0.277 0.723 24 H 0.122 0.878 25 H 0.116 0.884 26 H 0.110 0.890 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 -7.235 -10.307 13.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.623 3.377 3 O -0.931 6.931 4 O -0.940 6.940 5 C -0.746 4.746 6 C 0.270 3.730 7 O -0.445 6.445 8 N -0.220 5.220 9 C -0.441 4.441 10 H 0.141 0.859 11 C -0.154 4.154 12 N -0.504 5.504 13 Si 0.685 3.315 14 H -0.190 1.190 15 H -0.198 1.198 16 H -0.172 1.172 17 C -0.137 4.137 18 C -0.147 4.147 19 H 0.156 0.844 20 H 0.147 0.853 21 H 0.150 0.850 22 H 0.222 0.778 23 H 0.088 0.912 24 H 0.141 0.859 25 H 0.134 0.866 26 H 0.129 0.871 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.401 -7.141 -10.276 12.968 hybrid contribution -0.108 0.866 -0.312 0.927 sum 3.293 -6.275 -10.588 12.741 Atomic orbital electron populations 1.30128 1.25450 1.12410 1.11822 1.07302 0.79025 0.75516 0.75869 1.93586 1.79528 1.33895 1.86053 1.93547 1.79960 1.67421 1.53082 1.31806 1.13210 1.09412 1.20173 1.17631 0.85986 0.82540 0.86803 1.90544 1.49657 1.64217 1.40050 1.42551 1.47116 1.05161 1.27159 1.19460 1.31330 0.90580 1.02709 0.85872 1.25059 0.96732 0.96430 0.97217 1.69626 1.42107 1.10276 1.28394 0.86877 0.81068 0.81133 0.82451 1.19018 1.19773 1.17193 1.22883 0.99195 0.85948 1.05625 1.22868 0.87418 0.99208 1.05161 0.84353 0.85281 0.84950 0.77786 0.91198 0.85929 0.86580 0.87131 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -8.49 10.30 101.05 1.04 -7.45 15 2 S 2.44 38.06 5.30 -107.50 -0.57 37.49 15 3 O -0.93 -17.56 16.37 -57.83 -0.95 -18.51 15 4 O -0.94 -15.07 17.54 -57.83 -1.01 -16.08 15 5 C -0.65 -10.97 2.38 -91.77 -0.22 -11.19 15 6 C 0.49 10.84 6.88 -10.98 -0.08 10.76 15 7 O -0.56 -14.39 15.89 5.55 0.09 -14.30 15 8 N -0.58 -14.02 4.94 -10.96 -0.05 -14.08 15 9 C -0.31 -8.68 10.16 -14.94 -0.15 -8.83 15 10 H 0.12 3.82 7.40 -52.48 -0.39 3.43 15 11 C 0.05 1.40 5.50 -17.47 -0.10 1.30 15 12 N -0.87 -24.68 13.96 55.50 0.77 -23.90 15 13 Si 0.86 19.94 28.01 -169.99 -4.76 15.18 15 14 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 16 H -0.25 -5.57 6.16 56.52 0.35 -5.22 15 17 C -0.10 -1.32 9.63 -26.69 -0.26 -1.58 15 18 C -0.11 -1.49 9.98 -26.69 -0.27 -1.75 15 19 H 0.14 2.04 8.11 -51.92 -0.42 1.62 15 20 H 0.13 1.34 8.14 -51.92 -0.42 0.92 15 21 H 0.13 1.44 8.14 -51.92 -0.42 1.01 15 22 H 0.39 8.83 3.79 -40.82 -0.15 8.67 15 23 H 0.28 7.28 8.31 -40.82 -0.34 6.94 15 24 H 0.12 1.72 7.70 -51.93 -0.40 1.32 15 25 H 0.12 1.24 7.85 -51.93 -0.41 0.83 15 26 H 0.11 1.25 8.14 -51.93 -0.42 0.82 15 27 H 0.12 1.59 8.14 -51.93 -0.42 1.17 15 LS Contribution 252.94 15.07 3.81 3.81 Total: -1.00 -33.63 252.94 -5.35 -38.97 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -2.65 Total: 10.16 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -0.02 Total: -18.74 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.72 Total: -37.98 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -1.87 Total: -48.89 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.76 Total: 15.18 kcal Atomic # 16 Polarization: 38.06 SS G_CDS: -0.57 Total: 37.49 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -33.63 -5.35 -38.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306595974.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.435 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds