Wall clock time and date at job start Mon Mar 30 2020 03:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42095 * 108.58486 * 2 1 4 4 O 1.42103 * 108.57609 * 228.97196 * 2 1 3 5 5 C 1.81400 * 101.92406 * 114.49142 * 2 1 3 6 6 C 1.50704 * 115.54700 * 304.66372 * 5 2 1 7 7 O 1.21288 * 120.00144 * 136.04186 * 6 5 2 8 8 N 1.34778 * 119.99766 * 316.03826 * 6 5 2 9 9 C 1.37096 * 120.00208 * 175.08344 * 8 6 5 10 10 H 1.08003 * 119.99610 * 4.98449 * 9 8 6 11 11 C 1.38943 * 120.00224 * 184.98616 * 9 8 6 12 12 N 1.31414 * 120.00353 * 184.70153 * 11 9 8 13 13 Si 1.86797 * 120.00290 * 4.70683 * 11 9 8 14 14 H 1.48496 * 109.47701 * 94.30619 * 13 11 9 15 15 H 1.48500 * 109.47486 * 214.31293 * 13 11 9 16 16 H 1.48510 * 109.46771 * 334.30892 * 13 11 9 17 17 C 1.52999 * 117.50108 * 90.32583 * 5 2 1 18 18 C 1.52999 * 117.50511 * 158.98972 * 5 2 1 19 19 H 1.09002 * 109.46583 * 310.73788 * 1 2 3 20 20 H 1.08998 * 109.47010 * 70.73367 * 1 2 3 21 21 H 1.09003 * 109.47361 * 190.73890 * 1 2 3 22 22 H 0.97001 * 120.00140 * 354.80941 * 8 6 5 23 23 H 0.96996 * 120.00455 * 179.97438 * 12 11 9 24 24 H 1.09005 * 117.49973 * 215.00632 * 17 5 2 25 25 H 1.09000 * 117.49951 * 0.02656 * 17 5 2 26 26 H 1.08997 * 117.49207 * 359.97438 * 18 5 2 27 27 H 1.08995 * 117.50121 * 144.97293 * 18 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2669 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 1.5664 -0.0479 2.8029 7 8 1.0516 -0.7047 3.6830 8 7 1.5820 1.2972 2.8870 9 6 0.9289 1.9273 3.9146 10 1 0.4704 1.3454 4.7005 11 6 0.8567 3.3146 3.9449 12 7 0.3122 3.9219 4.9753 13 14 1.5335 4.3165 2.5210 14 1 0.4389 4.6196 1.5645 15 1 2.1059 5.5859 3.0368 16 1 2.5942 3.5402 1.8297 17 6 2.3423 -2.2567 1.6802 18 6 3.5743 -1.3566 1.8044 19 1 -0.3632 0.6707 0.7787 20 1 -0.3633 0.3391 -0.9701 21 1 -0.3634 -1.0097 0.1915 22 1 2.0586 1.8192 2.2228 23 1 0.2621 4.8903 4.9966 24 1 1.9932 -2.7597 2.5820 25 1 2.2186 -2.8151 0.7523 26 1 4.2604 -1.3233 0.9582 27 1 4.0358 -1.2672 2.7877 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306595974.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:16 Heat of formation + Delta-G solvation = -98.797126 kcal Electronic energy + Delta-G solvation = -15132.596997 eV Core-core repulsion = 12404.229683 eV Total energy + Delta-G solvation = -2728.367314 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 233.055 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.79006 -38.42334 -37.37911 -37.18715 -36.04918 -33.86675 -30.49047 -27.96190 -24.87847 -23.60326 -21.75791 -20.87583 -19.63405 -18.80278 -17.32666 -17.17288 -17.04730 -16.60110 -15.79228 -15.53565 -15.13539 -14.74508 -14.30374 -14.08700 -14.04205 -13.35018 -13.24555 -13.10700 -12.92698 -12.56576 -12.46214 -12.28263 -12.01390 -11.92564 -11.67054 -11.43236 -10.68165 -10.38310 -8.53246 -6.14651 -1.11482 1.20764 1.30745 1.40516 1.43505 1.74662 2.11621 2.19069 2.45475 2.65861 2.91688 3.12392 3.40915 3.71796 3.87979 4.01114 4.12326 4.45838 4.52337 4.81151 4.87112 5.07599 5.42282 5.81322 6.42318 6.70483 7.22242 7.68691 8.62215 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.030943 B = 0.011547 C = 0.009648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.679249 B = 2424.394891 C = 2901.439623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.461 3.539 3 O -0.966 6.966 4 O -0.940 6.940 5 C -0.682 4.682 6 C 0.500 3.500 7 O -0.600 6.600 8 N -0.590 5.590 9 C -0.333 4.333 10 H 0.074 0.926 11 C 0.008 3.992 12 N -0.913 5.913 13 Si 0.921 3.079 14 H -0.252 1.252 15 H -0.262 1.262 16 H -0.237 1.237 17 C -0.081 4.081 18 C -0.102 4.102 19 H 0.120 0.880 20 H 0.162 0.838 21 H 0.158 0.842 22 H 0.393 0.607 23 H 0.284 0.716 24 H 0.113 0.887 25 H 0.154 0.846 26 H 0.144 0.856 27 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 -8.064 -13.226 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.643 3.357 3 O -0.963 6.963 4 O -0.937 6.937 5 C -0.773 4.773 6 C 0.286 3.714 7 O -0.484 6.484 8 N -0.232 5.232 9 C -0.462 4.462 10 H 0.092 0.908 11 C -0.194 4.194 12 N -0.553 5.553 13 Si 0.741 3.259 14 H -0.176 1.176 15 H -0.186 1.186 16 H -0.161 1.161 17 C -0.119 4.119 18 C -0.140 4.140 19 H 0.139 0.861 20 H 0.180 0.820 21 H 0.176 0.824 22 H 0.232 0.768 23 H 0.094 0.906 24 H 0.131 0.869 25 H 0.171 0.829 26 H 0.162 0.838 27 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.291 -7.979 -13.171 15.986 hybrid contribution -0.404 0.905 0.597 1.157 sum 3.888 -7.074 -12.574 14.942 Atomic orbital electron populations 1.30136 1.22472 1.13925 1.13236 1.06566 0.79978 0.74413 0.74699 1.93541 1.81002 1.35609 1.86192 1.93550 1.80809 1.67183 1.52146 1.31795 1.15821 1.11328 1.18338 1.18465 0.83708 0.81801 0.87398 1.90525 1.50567 1.65064 1.42253 1.42447 1.47934 1.05997 1.26836 1.19074 1.32888 0.90976 1.03243 0.90837 1.25800 0.96748 0.97057 0.99750 1.69739 1.43985 1.10989 1.30550 0.85956 0.81030 0.79723 0.79182 1.17574 1.18593 1.16079 1.23143 0.97876 0.83825 1.07053 1.23177 0.86909 0.97516 1.06411 0.86087 0.81999 0.82397 0.76834 0.90637 0.86883 0.82853 0.83817 0.87074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -14.81 10.30 113.37 1.17 -13.64 15 2 S 2.46 69.01 5.30 -56.49 -0.30 68.71 15 3 O -0.97 -33.94 16.37 -127.37 -2.08 -36.03 15 4 O -0.94 -25.98 17.54 -127.37 -2.23 -28.21 15 5 C -0.68 -21.41 2.38 -11.54 -0.03 -21.44 15 6 C 0.50 22.32 6.88 87.66 0.60 22.93 15 7 O -0.60 -31.47 15.89 -3.05 -0.05 -31.52 15 8 N -0.59 -28.89 4.94 -306.99 -1.52 -30.41 15 9 C -0.33 -19.32 10.16 84.04 0.85 -18.47 15 10 H 0.07 4.90 7.40 -2.91 -0.02 4.88 15 11 C 0.01 0.46 5.50 84.92 0.47 0.93 15 12 N -0.91 -53.87 13.96 21.66 0.30 -53.56 15 13 Si 0.92 40.92 28.01 68.60 1.92 42.84 15 14 H -0.25 -10.59 7.11 99.48 0.71 -9.88 15 15 H -0.26 -11.09 7.11 99.48 0.71 -10.38 15 16 H -0.24 -10.03 6.16 99.48 0.61 -9.41 15 17 C -0.08 -1.92 9.63 30.62 0.29 -1.63 15 18 C -0.10 -2.51 9.98 30.62 0.31 -2.20 15 19 H 0.12 3.36 8.11 -2.39 -0.02 3.34 15 20 H 0.16 2.66 8.14 -2.39 -0.02 2.64 15 21 H 0.16 2.81 8.14 -2.39 -0.02 2.79 15 22 H 0.39 17.81 3.79 -92.71 -0.35 17.46 15 23 H 0.28 15.27 8.31 -92.71 -0.77 14.50 15 24 H 0.11 2.95 7.70 -2.38 -0.02 2.93 15 25 H 0.15 2.51 7.85 -2.39 -0.02 2.49 15 26 H 0.14 2.61 8.14 -2.39 -0.02 2.59 15 27 H 0.11 2.84 8.14 -2.39 -0.02 2.82 15 Total: -1.00 -75.39 252.94 0.45 -74.94 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.75 Total: 26.76 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: 3.66 Total: -33.52 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -1.22 Total: -83.97 kcal Atomic # 8 Polarization: -91.39 SS G_CDS: -4.37 Total: -95.76 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.92 Total: 42.84 kcal Atomic # 16 Polarization: 69.01 SS G_CDS: -0.30 Total: 68.71 kcal Total: -75.39 0.45 -74.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306595974.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.857 kcal (2) G-P(sol) polarization free energy of solvation -75.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds