Wall clock time and date at job start Mon Mar 30 2020 03:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31040 * 1 3 3 Si 1.86804 * 120.00215 * 2 1 4 4 H 1.48501 * 109.47159 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47114 * 119.99733 * 3 2 1 6 6 H 1.48503 * 109.46835 * 239.99992 * 3 2 1 7 7 C 1.39659 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99802 * 356.77473 * 7 2 1 9 9 C 1.41151 * 120.00685 * 176.76715 * 7 2 1 10 10 C 1.37982 * 122.77784 * 186.34823 * 9 7 2 11 11 S 1.70995 * 108.89313 * 179.97438 * 10 9 7 12 12 C 1.75917 * 90.77539 * 0.02562 * 11 10 9 13 13 C 1.47770 * 125.06611 * 179.97438 * 12 11 10 14 14 C 1.39986 * 120.94786 * 179.69546 * 13 12 11 15 15 N 1.32146 * 118.91822 * 179.71720 * 14 13 12 16 16 C 1.31860 * 120.97204 * 0.56793 * 15 14 13 17 17 N 1.31866 * 122.10726 * 359.70455 * 16 15 14 18 18 C 1.32146 * 120.97277 * 0.02562 * 17 16 15 19 19 N 1.29840 * 109.87223 * 359.76968 * 12 11 10 20 20 H 0.96995 * 119.99996 * 175.82979 * 1 2 3 21 21 H 1.07995 * 125.55096 * 359.97438 * 10 9 7 22 22 H 1.08005 * 120.53692 * 359.97438 * 14 13 12 23 23 H 1.07996 * 118.94993 * 179.72217 * 16 15 14 24 24 H 1.07999 * 120.53841 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2445 1.6177 0.0000 4 1 1.2795 2.7465 -0.0006 5 1 3.0982 1.6964 1.2125 6 1 3.0982 1.6963 -1.2125 7 6 2.0087 -1.2095 0.0005 8 1 1.4700 -2.1440 0.0536 9 6 3.4186 -1.2106 -0.0684 10 6 4.1591 -2.3674 -0.1999 11 16 5.8191 -1.9597 -0.2481 12 6 5.4288 -0.2519 -0.0877 13 6 6.4183 0.8448 -0.0454 14 6 6.0103 2.1782 0.0785 15 7 6.9296 3.1266 0.1180 16 6 8.2121 2.8326 0.0316 17 7 8.6399 1.5914 -0.0916 18 6 7.7901 0.5803 -0.1343 19 7 4.1415 -0.0981 -0.0165 20 1 -0.4850 -0.8378 -0.0611 21 1 3.7560 -3.3673 -0.2623 22 1 4.9615 2.4272 0.1449 23 1 8.9354 3.6340 0.0629 24 1 8.1482 -0.4336 -0.2348 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306608593.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:05 Heat of formation + Delta-G solvation = 72.143498 kcal Electronic energy + Delta-G solvation = -13302.998246 eV Core-core repulsion = 10921.645144 eV Total energy + Delta-G solvation = -2381.353102 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.83783 -38.50712 -33.82462 -33.70005 -32.57521 -29.13010 -26.10751 -25.24007 -24.47787 -21.74552 -19.41581 -18.63935 -17.67051 -16.86227 -16.49224 -15.51369 -14.82767 -14.09419 -13.64374 -13.53053 -13.41581 -13.10698 -12.51573 -12.08484 -11.15911 -10.96353 -10.90624 -10.78945 -10.33407 -10.02716 -9.69612 -9.25751 -9.19921 -8.54919 -8.35075 -7.69991 -7.33462 -4.71089 0.46929 1.09687 2.00962 2.14699 3.06327 3.29008 3.39618 3.77627 3.78425 4.04873 4.10984 4.19100 4.26761 4.46191 4.65258 5.14962 5.15246 5.39784 5.87799 6.15028 6.37989 6.67648 6.88128 6.98663 7.45527 7.88638 7.99573 8.06549 8.54940 8.81785 10.00239 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.028938 B = 0.010800 C = 0.007891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.342481 B = 2591.925590 C = 3547.678144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.042 3.958 3 Si 1.122 2.878 4 H -0.313 1.313 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.476 4.476 8 H 0.084 0.916 9 C 0.213 3.787 10 C -0.438 4.438 11 S 0.065 5.935 12 C 0.087 3.913 13 C -0.102 4.102 14 C 0.177 3.823 15 N -0.515 5.515 16 C 0.283 3.717 17 N -0.516 5.516 18 C 0.162 3.838 19 N -0.471 5.471 20 H 0.283 0.717 21 H 0.149 0.851 22 H 0.173 0.827 23 H 0.198 0.802 24 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.081 2.219 -0.287 12.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.178 4.178 3 Si 0.955 3.045 4 H -0.244 1.244 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.510 4.510 8 H 0.102 0.898 9 C 0.091 3.909 10 C -0.578 4.578 11 S 0.317 5.683 12 C -0.189 4.189 13 C -0.110 4.110 14 C 0.008 3.992 15 N -0.228 5.228 16 C -0.005 4.005 17 N -0.229 5.229 18 C -0.007 4.007 19 N -0.192 5.192 20 H 0.094 0.906 21 H 0.166 0.834 22 H 0.190 0.810 23 H 0.214 0.786 24 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 13.064 4.399 -0.243 13.787 hybrid contribution -1.691 -2.814 -0.024 3.283 sum 11.374 1.585 -0.268 11.487 Atomic orbital electron populations 1.70718 1.07787 1.32535 1.32806 1.27474 0.95618 1.05286 0.89390 0.82529 0.71931 0.71090 0.78940 1.24414 1.20749 1.20928 1.20055 0.88655 0.96438 1.45897 0.89795 1.17913 0.95030 0.84073 0.93934 1.25333 0.93156 1.02674 1.36638 1.82464 1.10572 1.02127 1.73167 1.24905 0.92405 0.94593 1.06965 1.19800 0.93824 0.93860 1.03561 1.23613 1.00334 0.87184 0.88077 1.68462 1.02799 1.37501 1.14077 1.25028 0.91218 0.92988 0.91256 1.68392 1.39535 1.00734 1.14226 1.23299 0.87824 0.99154 0.90421 1.65930 1.03356 1.31888 1.17988 0.90572 0.83361 0.80962 0.78595 0.81198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.38 13.67 55.53 0.76 -21.62 14 2 C 0.04 1.14 5.51 -17.36 -0.10 1.04 14 3 Si 1.12 26.88 23.56 -169.99 -4.01 22.88 14 4 H -0.31 -7.40 7.11 56.52 0.40 -7.00 14 5 H -0.28 -6.49 6.85 56.52 0.39 -6.10 14 6 H -0.28 -6.59 6.96 56.52 0.39 -6.20 14 7 C -0.48 -13.00 9.67 -37.95 -0.37 -13.37 14 8 H 0.08 2.32 8.06 -52.48 -0.42 1.90 14 9 C 0.21 5.45 6.28 -86.45 -0.54 4.91 14 10 C -0.44 -10.05 10.99 30.64 0.34 -9.71 14 11 S 0.07 1.22 22.20 -107.50 -2.39 -1.17 14 12 C 0.09 1.78 7.32 -14.50 -0.11 1.68 14 13 C -0.10 -1.80 5.91 -104.69 -0.62 -2.41 14 14 C 0.18 3.11 10.97 -16.76 -0.18 2.93 14 15 N -0.52 -8.07 10.42 -14.24 -0.15 -8.22 14 16 C 0.28 3.73 12.27 -92.04 -1.13 2.60 14 17 N -0.52 -7.25 10.42 -14.24 -0.15 -7.40 14 18 C 0.16 2.37 10.88 -16.76 -0.18 2.19 14 19 N -0.47 -11.32 4.95 -9.17 -0.05 -11.36 14 20 H 0.28 7.47 8.72 -40.82 -0.36 7.11 14 21 H 0.15 3.26 8.06 -52.49 -0.42 2.84 14 22 H 0.17 3.20 5.52 -52.48 -0.29 2.91 14 23 H 0.20 1.76 8.06 -52.49 -0.42 1.33 14 24 H 0.17 2.10 7.40 -52.49 -0.39 1.71 14 LS Contribution 231.75 15.07 3.49 3.49 Total: -1.00 -28.54 231.75 -6.49 -35.03 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -1.12 Total: -1.49 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -2.89 Total: -10.14 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.42 Total: -48.60 kcal Atomic # 14 Polarization: 26.88 SS G_CDS: -4.01 Total: 22.88 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.39 Total: -1.17 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -28.54 -6.49 -35.03 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306608593.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.173 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds