Wall clock time and date at job start Mon Mar 30 2020 03:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31040 * 1 3 3 Si 1.86804 * 120.00215 * 2 1 4 4 H 1.48501 * 109.47159 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47114 * 119.99733 * 3 2 1 6 6 H 1.48503 * 109.46835 * 239.99992 * 3 2 1 7 7 C 1.39659 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99802 * 356.77473 * 7 2 1 9 9 C 1.41151 * 120.00685 * 176.76715 * 7 2 1 10 10 C 1.37982 * 122.77784 * 186.34823 * 9 7 2 11 11 S 1.70995 * 108.89313 * 179.97438 * 10 9 7 12 12 C 1.75917 * 90.77539 * 0.02562 * 11 10 9 13 13 C 1.47770 * 125.06611 * 179.97438 * 12 11 10 14 14 C 1.39986 * 120.94786 * 179.69546 * 13 12 11 15 15 N 1.32146 * 118.91822 * 179.71720 * 14 13 12 16 16 C 1.31860 * 120.97204 * 0.56793 * 15 14 13 17 17 N 1.31866 * 122.10726 * 359.70455 * 16 15 14 18 18 C 1.32146 * 120.97277 * 0.02562 * 17 16 15 19 19 N 1.29840 * 109.87223 * 359.76968 * 12 11 10 20 20 H 0.96995 * 119.99996 * 175.82979 * 1 2 3 21 21 H 1.07995 * 125.55096 * 359.97438 * 10 9 7 22 22 H 1.08005 * 120.53692 * 359.97438 * 14 13 12 23 23 H 1.07996 * 118.94993 * 179.72217 * 16 15 14 24 24 H 1.07999 * 120.53841 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2445 1.6177 0.0000 4 1 1.2795 2.7465 -0.0006 5 1 3.0982 1.6964 1.2125 6 1 3.0982 1.6963 -1.2125 7 6 2.0087 -1.2095 0.0005 8 1 1.4700 -2.1440 0.0536 9 6 3.4186 -1.2106 -0.0684 10 6 4.1591 -2.3674 -0.1999 11 16 5.8191 -1.9597 -0.2481 12 6 5.4288 -0.2519 -0.0877 13 6 6.4183 0.8448 -0.0454 14 6 6.0103 2.1782 0.0785 15 7 6.9296 3.1266 0.1180 16 6 8.2121 2.8326 0.0316 17 7 8.6399 1.5914 -0.0916 18 6 7.7901 0.5803 -0.1343 19 7 4.1415 -0.0981 -0.0165 20 1 -0.4850 -0.8378 -0.0611 21 1 3.7560 -3.3673 -0.2623 22 1 4.9615 2.4272 0.1449 23 1 8.9354 3.6340 0.0629 24 1 8.1482 -0.4336 -0.2348 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306608593.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:04 Heat of formation + Delta-G solvation = 53.643270 kcal Electronic energy + Delta-G solvation = -13303.800476 eV Core-core repulsion = 10921.645144 eV Total energy + Delta-G solvation = -2382.155332 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.04526 -40.25890 -35.66379 -34.88610 -34.07259 -30.82714 -27.99946 -26.63565 -25.70269 -23.29539 -21.30660 -20.32753 -18.86740 -18.34504 -17.96842 -17.20870 -16.11150 -15.77511 -15.20110 -15.05848 -14.78993 -14.69404 -14.32168 -13.87300 -12.82368 -12.76509 -12.40022 -12.02511 -11.96964 -11.68459 -11.60051 -11.05295 -10.40406 -10.19064 -10.08404 -9.46351 -9.32446 -6.70665 -0.86832 -0.11760 0.45133 0.53344 1.28360 1.41260 1.46427 1.92043 2.05510 2.30752 2.70043 2.88877 3.07113 3.14660 3.20111 3.39788 3.85972 4.30755 4.46047 4.69414 4.87166 5.02277 5.23231 5.39834 5.75263 5.89639 6.03112 6.60992 6.90877 7.01508 7.97869 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.028938 B = 0.010800 C = 0.007891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.342481 B = 2591.925590 C = 3547.678144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.011 3.989 3 Si 1.157 2.843 4 H -0.315 1.315 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.060 0.940 9 C 0.195 3.805 10 C -0.451 4.451 11 S 0.174 5.826 12 C 0.086 3.914 13 C -0.132 4.132 14 C 0.171 3.829 15 N -0.527 5.527 16 C 0.300 3.700 17 N -0.516 5.516 18 C 0.184 3.816 19 N -0.510 5.510 20 H 0.277 0.723 21 H 0.152 0.848 22 H 0.156 0.844 23 H 0.242 0.758 24 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.173 2.682 -0.433 16.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.203 4.203 3 Si 0.986 3.014 4 H -0.246 1.246 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.549 4.549 8 H 0.079 0.921 9 C 0.071 3.929 10 C -0.591 4.591 11 S 0.428 5.572 12 C -0.189 4.189 13 C -0.140 4.140 14 C 0.002 3.998 15 N -0.240 5.240 16 C 0.013 3.987 17 N -0.229 5.229 18 C 0.015 3.985 19 N -0.232 5.232 20 H 0.088 0.912 21 H 0.169 0.831 22 H 0.173 0.827 23 H 0.258 0.742 24 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 17.192 4.837 -0.389 17.864 hybrid contribution -2.561 -3.037 0.004 3.973 sum 14.631 1.800 -0.385 14.746 Atomic orbital electron populations 1.70757 1.08228 1.32143 1.36068 1.28307 0.95824 1.07300 0.88829 0.82087 0.71092 0.68839 0.79339 1.24613 1.20122 1.20537 1.20005 0.90141 0.95676 1.49048 0.92141 1.17968 0.94817 0.85656 0.94452 1.25794 0.96816 1.02482 1.33974 1.81940 1.05539 0.99192 1.70560 1.25500 0.92062 0.96896 1.04421 1.19777 0.94404 0.92954 1.06884 1.23476 1.00295 0.87847 0.88166 1.68546 1.03585 1.36981 1.14919 1.25982 0.90993 0.93872 0.87845 1.68572 1.38887 1.00936 1.14458 1.23657 0.86407 1.00551 0.87899 1.65833 1.04835 1.31499 1.21005 0.91214 0.83052 0.82660 0.74184 0.78660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.89 13.67 21.78 0.30 -48.59 14 2 C 0.01 0.64 5.51 85.15 0.47 1.11 14 3 Si 1.16 56.19 23.56 68.60 1.62 57.80 14 4 H -0.31 -14.98 7.11 99.48 0.71 -14.28 14 5 H -0.27 -12.78 6.85 99.48 0.68 -12.10 14 6 H -0.28 -13.07 6.96 99.48 0.69 -12.37 14 7 C -0.51 -29.35 9.67 23.33 0.23 -29.13 14 8 H 0.06 3.58 8.06 -2.91 -0.02 3.56 14 9 C 0.20 10.07 6.28 39.66 0.25 10.32 14 10 C -0.45 -20.16 10.99 67.76 0.74 -19.42 14 11 S 0.17 5.87 22.20 -56.49 -1.25 4.62 14 12 C 0.09 3.33 7.32 87.51 0.64 3.97 14 13 C -0.13 -4.24 5.91 -19.91 -0.12 -4.36 14 14 C 0.17 5.66 10.97 85.07 0.93 6.60 14 15 N -0.53 -14.84 10.42 -198.96 -2.07 -16.92 14 16 C 0.30 6.50 12.27 180.84 2.22 8.72 14 17 N -0.52 -11.96 10.42 -198.96 -2.07 -14.04 14 18 C 0.18 4.57 10.88 85.07 0.93 5.50 14 19 N -0.51 -24.25 4.95 -182.92 -0.91 -25.15 14 20 H 0.28 15.62 8.72 -92.71 -0.81 14.81 14 21 H 0.15 6.55 8.06 -2.91 -0.02 6.52 14 22 H 0.16 5.67 5.52 -2.91 -0.02 5.65 14 23 H 0.24 2.88 8.06 -2.91 -0.02 2.86 14 24 H 0.20 3.72 7.40 -2.91 -0.02 3.69 14 Total: -1.00 -63.69 231.75 3.06 -60.63 By element: Atomic # 1 Polarization: -2.82 SS G_CDS: 1.16 Total: -1.66 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 6.29 Total: -16.69 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -4.75 Total: -104.70 kcal Atomic # 14 Polarization: 56.19 SS G_CDS: 1.62 Total: 57.80 kcal Atomic # 16 Polarization: 5.87 SS G_CDS: -1.25 Total: 4.62 kcal Total: -63.69 3.06 -60.63 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306608593.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.269 kcal (2) G-P(sol) polarization free energy of solvation -63.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds