Wall clock time and date at job start Mon Mar 30 2020 03:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 120.00242 * 2 1 4 4 H 1.48503 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47351 * 299.99671 * 3 2 1 6 6 H 1.48494 * 109.46923 * 59.99980 * 3 2 1 7 7 C 1.39941 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00204 * 169.44192 * 7 2 1 9 9 C 1.41420 * 119.99764 * 349.43538 * 7 2 1 10 10 C 1.40786 * 120.63595 * 328.59294 * 9 7 2 11 11 N 1.31463 * 120.51973 * 180.02562 * 10 9 7 12 12 C 1.32036 * 122.04299 * 359.97242 * 11 10 9 13 13 C 1.39110 * 121.23457 * 0.28444 * 12 11 10 14 14 O 1.35914 * 120.34477 * 179.71647 * 13 12 11 15 15 C 1.38523 * 119.31501 * 359.47140 * 13 12 11 16 16 C 1.50698 * 120.92828 * 180.26702 * 15 13 12 17 17 F 1.39895 * 109.46947 * 261.54698 * 16 15 13 18 18 F 1.39906 * 109.46661 * 21.54060 * 16 15 13 19 19 F 1.39902 * 109.47438 * 141.53962 * 16 15 13 20 20 H 0.97004 * 119.99882 * 0.02562 * 1 2 3 21 21 H 1.08002 * 119.73563 * 359.97438 * 10 9 7 22 22 H 1.07999 * 119.38418 * 179.97438 * 12 11 10 23 23 H 0.96700 * 113.99771 * 89.99742 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3463 0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8836 2.3963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0742 -1.2199 -0.1719 9 6 1.3187 -2.4263 0.2235 10 6 0.1816 -2.4635 1.0527 11 7 -0.4571 -3.5937 1.2598 12 6 -0.0689 -4.7289 0.7084 13 6 1.0472 -4.7838 -0.1201 14 8 1.4341 -5.9633 -0.6737 15 6 1.7573 -3.6230 -0.3792 16 6 2.9683 -3.6396 -1.2761 17 9 4.1271 -3.6895 -0.4940 18 9 2.9177 -4.7642 -2.1069 19 9 2.9840 -2.4810 -2.0600 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1683 -1.5564 1.5230 22 1 -0.6254 -5.6326 0.9082 23 1 1.0334 -6.1436 -1.5351 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306625624.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:48 Heat of formation + Delta-G solvation = -176.699939 kcal Electronic energy + Delta-G solvation = -16743.081869 eV Core-core repulsion = 13334.035743 eV Total energy + Delta-G solvation = -3409.046125 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.14293 -46.70468 -46.56247 -38.99100 -36.39595 -34.19512 -31.64876 -29.14162 -26.38894 -24.84597 -21.90976 -21.29202 -18.40804 -17.55309 -17.47684 -17.16744 -16.65280 -15.59986 -14.93303 -14.31694 -14.06021 -13.52819 -13.43044 -13.18442 -13.09448 -12.84441 -12.79416 -12.36487 -11.78574 -11.60989 -11.38628 -11.18291 -10.97556 -10.51163 -10.28646 -9.67381 -8.69966 -8.20841 -7.73980 -7.18423 -4.88120 2.13738 2.33735 2.92210 2.96223 2.99231 3.68981 3.77016 4.30998 4.77815 4.98538 5.10728 5.20789 5.57673 5.85370 6.29455 6.47567 6.73778 6.77042 7.04415 7.20734 7.56184 7.96156 8.07892 8.34509 8.41020 9.32858 9.77421 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.027811 B = 0.012653 C = 0.009400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.571585 B = 2212.309303 C = 2977.859033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.429 4.429 8 H 0.091 0.909 9 C 0.107 3.893 10 C 0.065 3.935 11 N -0.451 5.451 12 C -0.067 4.067 13 C 0.130 3.870 14 O -0.501 6.501 15 C -0.308 4.308 16 C 0.528 3.472 17 F -0.193 7.193 18 F -0.192 7.192 19 F -0.175 7.175 20 H 0.291 0.709 21 H 0.159 0.841 22 H 0.133 0.867 23 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 -1.073 -2.263 3.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.146 4.146 3 Si 0.745 3.255 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.191 1.191 7 C -0.458 4.458 8 H 0.109 0.891 9 C 0.101 3.899 10 C -0.104 4.104 11 N -0.160 5.160 12 C -0.217 4.217 13 C 0.083 3.917 14 O -0.309 6.309 15 C -0.316 4.316 16 C 0.474 3.526 17 F -0.175 7.175 18 F -0.174 7.174 19 F -0.156 7.156 20 H 0.103 0.897 21 H 0.176 0.824 22 H 0.151 0.849 23 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 1.578 -1.100 -1.282 2.312 hybrid contribution 0.979 0.705 -1.261 1.746 sum 2.557 -0.395 -2.543 3.628 Atomic orbital electron populations 1.69724 1.07725 1.30636 1.32049 1.26045 0.94993 1.02034 0.91564 0.85992 0.80989 0.79445 0.79024 1.17884 1.19379 1.19146 1.19820 0.96606 0.89871 1.39473 0.89070 1.18189 0.92338 0.90994 0.88355 1.23100 0.94742 0.94744 0.97798 1.67189 1.29564 0.98799 1.20412 1.22051 0.98004 0.96315 1.05343 1.18934 0.93664 0.83330 0.95747 1.84737 1.71437 1.36461 1.38306 1.20475 1.03192 0.96802 1.11173 1.18017 0.83360 0.72507 0.78672 1.93124 1.53180 1.96135 1.75053 1.93054 1.96676 1.53553 1.74111 1.93163 1.96736 1.49737 1.75978 0.89735 0.82394 0.84943 0.76208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.19 11.04 55.55 0.61 -17.57 14 2 C 0.07 1.71 5.25 -17.34 -0.09 1.62 14 3 Si 0.92 17.23 29.57 -169.99 -5.03 12.21 14 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 14 5 H -0.27 -4.96 7.11 56.52 0.40 -4.56 14 6 H -0.27 -4.82 7.11 56.52 0.40 -4.42 14 7 C -0.43 -10.55 7.34 -37.73 -0.28 -10.83 14 8 H 0.09 2.23 6.87 -52.49 -0.36 1.87 14 9 C 0.11 2.71 5.50 -106.68 -0.59 2.13 14 10 C 0.07 1.63 9.84 -16.75 -0.16 1.47 14 11 N -0.45 -10.97 10.33 -12.42 -0.13 -11.10 14 12 C -0.07 -1.52 11.13 -17.14 -0.19 -1.71 14 13 C 0.13 2.92 6.64 -39.15 -0.26 2.66 14 14 O -0.50 -9.75 11.50 -19.47 -0.22 -9.98 14 15 C -0.31 -7.44 5.53 -103.48 -0.57 -8.01 14 16 C 0.53 11.92 2.92 36.00 0.11 12.02 14 17 F -0.19 -4.35 17.30 2.25 0.04 -4.32 14 18 F -0.19 -3.95 14.91 2.25 0.03 -3.92 14 19 F -0.17 -3.99 14.91 2.25 0.03 -3.96 14 20 H 0.29 6.09 8.30 -40.82 -0.34 5.75 14 21 H 0.16 3.93 6.44 -52.49 -0.34 3.60 14 22 H 0.13 2.63 8.06 -52.49 -0.42 2.20 14 23 H 0.38 5.73 8.77 45.56 0.40 6.13 14 LS Contribution 223.45 15.07 3.37 3.37 Total: -1.00 -26.57 223.45 -3.19 -29.76 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 0.14 Total: 6.16 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -2.04 Total: -0.65 kcal Atomic # 7 Polarization: -29.16 SS G_CDS: 0.49 Total: -28.68 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.22 Total: -9.98 kcal Atomic # 9 Polarization: -12.30 SS G_CDS: 0.11 Total: -12.20 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.21 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -26.57 -3.19 -29.76 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306625624.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.943 kcal (2) G-P(sol) polarization free energy of solvation -26.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds