Wall clock time and date at job start Mon Mar 30 2020 03:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 120.00242 * 2 1 4 4 H 1.48503 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47351 * 299.99671 * 3 2 1 6 6 H 1.48494 * 109.46923 * 59.99980 * 3 2 1 7 7 C 1.39941 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00204 * 169.44192 * 7 2 1 9 9 C 1.41420 * 119.99764 * 349.43538 * 7 2 1 10 10 C 1.40786 * 120.63595 * 328.59294 * 9 7 2 11 11 N 1.31463 * 120.51973 * 180.02562 * 10 9 7 12 12 C 1.32036 * 122.04299 * 359.97242 * 11 10 9 13 13 C 1.39110 * 121.23457 * 0.28444 * 12 11 10 14 14 O 1.35914 * 120.34477 * 179.71647 * 13 12 11 15 15 C 1.38523 * 119.31501 * 359.47140 * 13 12 11 16 16 C 1.50698 * 120.92828 * 180.26702 * 15 13 12 17 17 F 1.39895 * 109.46947 * 261.54698 * 16 15 13 18 18 F 1.39906 * 109.46661 * 21.54060 * 16 15 13 19 19 F 1.39902 * 109.47438 * 141.53962 * 16 15 13 20 20 H 0.97004 * 119.99882 * 0.02562 * 1 2 3 21 21 H 1.08002 * 119.73563 * 359.97438 * 10 9 7 22 22 H 1.07999 * 119.38418 * 179.97438 * 12 11 10 23 23 H 0.96700 * 113.99771 * 89.99742 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3463 0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8836 2.3963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0742 -1.2199 -0.1719 9 6 1.3187 -2.4263 0.2235 10 6 0.1816 -2.4635 1.0527 11 7 -0.4571 -3.5937 1.2598 12 6 -0.0689 -4.7289 0.7084 13 6 1.0472 -4.7838 -0.1201 14 8 1.4341 -5.9633 -0.6737 15 6 1.7573 -3.6230 -0.3792 16 6 2.9683 -3.6396 -1.2761 17 9 4.1271 -3.6895 -0.4940 18 9 2.9177 -4.7642 -2.1069 19 9 2.9840 -2.4810 -2.0600 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1683 -1.5564 1.5230 22 1 -0.6254 -5.6326 0.9082 23 1 1.0334 -6.1436 -1.5351 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306625624.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:48 Heat of formation + Delta-G solvation = -194.254269 kcal Electronic energy + Delta-G solvation = -16743.843082 eV Core-core repulsion = 13334.035743 eV Total energy + Delta-G solvation = -3409.807338 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.91483 -48.44521 -48.36136 -40.76946 -38.07360 -35.97175 -33.45774 -30.93033 -28.19434 -26.65487 -23.70049 -23.09776 -20.14830 -19.32245 -19.26252 -18.94816 -18.38744 -17.31535 -16.67267 -15.97252 -15.85308 -15.28892 -15.19064 -14.85910 -14.81938 -14.61766 -14.57289 -14.14475 -13.49464 -13.32610 -12.97771 -12.90811 -12.79188 -12.07267 -11.95321 -11.35621 -10.52224 -10.03974 -9.55100 -8.90647 -6.72573 0.31545 0.56932 1.39533 1.47215 1.55322 1.97624 2.14808 2.55284 3.05634 3.19821 3.34663 3.43888 3.77290 4.09347 4.50027 4.67878 4.94612 5.01046 5.23762 5.45288 5.74741 6.11010 6.34559 6.54451 6.81116 7.48501 8.08337 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.027811 B = 0.012653 C = 0.009400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.571585 B = 2212.309303 C = 2977.859033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.042 3.958 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.254 1.254 7 C -0.450 4.450 8 H 0.086 0.914 9 C 0.085 3.915 10 C 0.044 3.956 11 N -0.459 5.459 12 C -0.074 4.074 13 C 0.139 3.861 14 O -0.497 6.497 15 C -0.330 4.330 16 C 0.532 3.468 17 F -0.194 7.194 18 F -0.179 7.179 19 F -0.178 7.178 20 H 0.303 0.697 21 H 0.151 0.849 22 H 0.162 0.838 23 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 -0.982 -2.634 3.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.178 4.178 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.178 1.178 7 C -0.478 4.478 8 H 0.104 0.896 9 C 0.079 3.921 10 C -0.124 4.124 11 N -0.168 5.168 12 C -0.225 4.225 13 C 0.092 3.908 14 O -0.309 6.309 15 C -0.338 4.338 16 C 0.478 3.522 17 F -0.176 7.176 18 F -0.161 7.161 19 F -0.160 7.160 20 H 0.114 0.886 21 H 0.168 0.832 22 H 0.179 0.821 23 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 1.826 -1.024 -1.667 2.676 hybrid contribution 0.865 0.555 -1.186 1.569 sum 2.690 -0.469 -2.853 3.949 Atomic orbital electron populations 1.69738 1.08927 1.32215 1.31566 1.26840 0.95675 1.04686 0.90574 0.85024 0.79237 0.75267 0.79628 1.18266 1.18578 1.17820 1.19967 0.96478 0.90769 1.40629 0.89640 1.18430 0.92839 0.91914 0.88867 1.22986 0.95612 0.94928 0.98909 1.67171 1.29782 0.99191 1.20683 1.22508 0.98330 0.96687 1.04962 1.18942 0.92937 0.83674 0.95221 1.84677 1.71605 1.34800 1.39788 1.20762 1.04076 0.97236 1.11757 1.17843 0.82921 0.72784 0.78621 1.93117 1.53141 1.96160 1.75178 1.93070 1.96612 1.52756 1.73639 1.93151 1.96726 1.50098 1.75990 0.88595 0.83160 0.82091 0.73551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.31 11.04 21.83 0.24 -37.07 14 2 C 0.04 1.88 5.25 85.25 0.45 2.32 14 3 Si 0.99 34.47 29.57 68.60 2.03 36.49 14 4 H -0.26 -9.10 7.11 99.48 0.71 -8.39 14 5 H -0.26 -8.75 7.11 99.48 0.71 -8.04 14 6 H -0.25 -8.30 7.11 99.48 0.71 -7.59 14 7 C -0.45 -22.24 7.34 23.47 0.17 -22.07 14 8 H 0.09 4.21 6.87 -2.91 -0.02 4.19 14 9 C 0.09 4.34 5.50 -21.20 -0.12 4.23 14 10 C 0.04 2.21 9.84 85.37 0.84 3.05 14 11 N -0.46 -22.20 10.33 -193.20 -2.00 -24.20 14 12 C -0.07 -3.25 11.13 84.87 0.94 -2.30 14 13 C 0.14 6.06 6.64 22.55 0.15 6.21 14 14 O -0.50 -18.05 11.50 -92.58 -1.06 -19.12 14 15 C -0.33 -15.72 5.53 -19.12 -0.11 -15.82 14 16 C 0.53 23.51 2.92 71.24 0.21 23.71 14 17 F -0.19 -8.60 17.30 44.97 0.78 -7.82 14 18 F -0.18 -7.04 14.91 44.97 0.67 -6.37 14 19 F -0.18 -8.05 14.91 44.97 0.67 -7.38 14 20 H 0.30 12.45 8.30 -92.71 -0.77 11.68 14 21 H 0.15 7.67 6.44 -2.91 -0.02 7.65 14 22 H 0.16 5.97 8.06 -2.91 -0.02 5.95 14 23 H 0.41 10.90 8.77 -74.06 -0.65 10.25 14 Total: -1.00 -54.96 223.45 4.51 -50.45 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.64 Total: 15.68 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 2.54 Total: -0.68 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -1.75 Total: -61.27 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -1.06 Total: -19.12 kcal Atomic # 9 Polarization: -23.68 SS G_CDS: 2.12 Total: -21.56 kcal Atomic # 14 Polarization: 34.47 SS G_CDS: 2.03 Total: 36.49 kcal Total: -54.96 4.51 -50.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306625624.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.806 kcal (2) G-P(sol) polarization free energy of solvation -54.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds