Wall clock time and date at job start Mon Mar 30 2020 03:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30763 * 1 3 3 Si 1.86801 * 119.99762 * 2 1 4 4 H 1.48501 * 109.47055 * 239.99637 * 3 2 1 5 5 H 1.48494 * 109.47312 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47074 * 119.99906 * 3 2 1 7 7 C 1.40055 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00552 * 180.02562 * 7 2 1 9 9 C 1.41039 * 119.99709 * 0.02562 * 7 2 1 10 10 N 1.33695 * 119.89486 * 0.02562 * 9 7 2 11 11 C 1.31340 * 121.57549 * 179.97438 * 10 9 7 12 12 C 1.38961 * 121.18362 * 359.74525 * 11 10 9 13 13 C 1.38597 * 119.65714 * 0.51373 * 12 11 10 14 14 C 1.50703 * 120.73013 * 179.77213 * 13 12 11 15 15 F 1.39905 * 109.47157 * 359.71816 * 14 13 12 16 16 F 1.39900 * 109.47159 * 239.72117 * 14 13 12 17 17 F 1.39897 * 109.47274 * 119.71808 * 14 13 12 18 18 C 1.38991 * 118.53904 * 359.49814 * 13 12 11 19 19 O 1.35573 * 120.58534 * 180.27494 * 18 13 12 20 20 H 0.96998 * 119.99592 * 0.02562 * 1 2 3 21 21 H 1.07995 * 119.40861 * 180.02562 * 11 10 9 22 22 H 1.07995 * 120.16720 * 180.25637 * 12 11 10 23 23 H 0.96697 * 114.00294 * 89.99953 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.0954 1.6964 -1.2125 5 1 1.2766 2.7465 -0.0006 6 1 3.0953 1.6965 1.2125 7 6 2.0080 -1.2129 0.0005 8 1 3.0880 -1.2129 0.0010 9 6 1.3028 -2.4343 0.0005 10 7 -0.0342 -2.4319 -0.0005 11 6 -0.7239 -3.5496 -0.0010 12 6 -0.0901 -4.7862 -0.0058 13 6 1.2945 -4.8472 0.0007 14 6 2.0068 -6.1753 0.0008 15 9 1.0648 -7.2097 0.0003 16 9 2.8078 -6.2747 1.1435 17 9 2.8089 -6.2744 -1.1411 18 6 2.0116 -3.6566 0.0012 19 8 3.3673 -3.6679 0.0018 20 1 -0.4849 0.8401 -0.0004 21 1 -1.8030 -3.5068 -0.0023 22 1 -0.6735 -5.6950 -0.0104 23 1 3.7611 -3.6710 -0.8813 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306631162.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:21 Heat of formation + Delta-G solvation = -166.185442 kcal Electronic energy + Delta-G solvation = -16364.358417 eV Core-core repulsion = 12955.768234 eV Total energy + Delta-G solvation = -3408.590183 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.53553 -47.08886 -46.98158 -38.83162 -35.92303 -33.98477 -31.40763 -29.46252 -26.09218 -25.24331 -21.69432 -21.39711 -18.35651 -17.92554 -17.85488 -17.29275 -16.28483 -15.64367 -14.75365 -14.38182 -13.95619 -13.78598 -13.70142 -13.48051 -13.22951 -13.20174 -12.84307 -12.23146 -11.90810 -11.56349 -11.31451 -11.26029 -10.71865 -10.62087 -9.84324 -9.64134 -8.65840 -7.89883 -7.77145 -6.67907 -4.76561 2.18534 2.43389 2.97633 2.99885 3.04175 3.34995 3.78100 4.43723 4.48548 4.75769 5.03463 5.19444 5.58433 5.92552 6.21418 6.43657 6.71184 6.90064 7.05787 7.12028 7.54552 8.00084 8.14242 8.49718 8.76975 9.74583 10.02852 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.043665 B = 0.008483 C = 0.007437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.096434 B = 3299.958571 C = 3764.003100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.063 3.937 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.401 4.401 8 H 0.095 0.905 9 C 0.232 3.768 10 N -0.461 5.461 11 C 0.129 3.871 12 C -0.280 4.280 13 C -0.137 4.137 14 C 0.512 3.488 15 F -0.187 7.187 16 F -0.179 7.179 17 F -0.187 7.187 18 C -0.016 4.016 19 O -0.484 6.484 20 H 0.279 0.721 21 H 0.133 0.867 22 H 0.112 0.888 23 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 -3.827 -1.510 4.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.324 5.324 2 C -0.164 4.164 3 Si 0.740 3.260 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.431 4.431 8 H 0.113 0.887 9 C 0.108 3.892 10 N -0.175 5.175 11 C -0.038 4.038 12 C -0.303 4.303 13 C -0.144 4.144 14 C 0.458 3.542 15 F -0.168 7.168 16 F -0.160 7.160 17 F -0.168 7.168 18 C -0.067 4.067 19 O -0.290 6.290 20 H 0.090 0.910 21 H 0.150 0.850 22 H 0.130 0.870 23 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.026 -2.889 -0.888 3.192 hybrid contribution 0.906 -0.508 -0.510 1.157 sum 1.931 -3.397 -1.398 4.150 Atomic orbital electron populations 1.70109 1.07393 1.28709 1.26162 1.26191 0.95050 1.01591 0.93610 0.86223 0.80026 0.79530 0.80238 1.18666 1.19980 1.18603 1.19649 0.95087 0.88935 1.39423 0.88705 1.18904 0.88339 0.91157 0.90818 1.68822 1.06365 1.26551 1.15778 1.22612 0.99327 0.87900 0.93998 1.21070 0.91822 0.99401 1.17999 1.20291 0.95445 0.89859 1.08822 1.18469 0.76643 0.85752 0.73313 1.93098 1.65302 1.62149 1.96284 1.93173 1.74981 1.96692 1.51165 1.93126 1.75257 1.96763 1.51705 1.19111 0.82756 0.91634 1.13179 1.84762 1.16324 1.96248 1.31682 0.90969 0.85000 0.86972 0.78333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.59 11.46 55.55 0.64 -16.96 14 2 C 0.06 1.51 5.50 -17.33 -0.10 1.41 14 3 Si 0.92 17.59 29.56 -169.99 -5.02 12.56 14 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 14 5 H -0.28 -5.12 7.11 56.52 0.40 -4.72 14 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 14 7 C -0.40 -10.21 8.95 -37.84 -0.34 -10.55 14 8 H 0.09 2.28 7.32 -52.49 -0.38 1.90 14 9 C 0.23 6.09 6.56 -84.83 -0.56 5.54 14 10 N -0.46 -12.05 7.86 -11.00 -0.09 -12.14 14 11 C 0.13 2.93 11.18 -17.49 -0.20 2.73 14 12 C -0.28 -6.08 9.51 -39.18 -0.37 -6.45 14 13 C -0.14 -3.08 5.40 -104.21 -0.56 -3.65 14 14 C 0.51 10.34 3.02 36.01 0.11 10.45 14 15 F -0.19 -3.52 16.06 2.25 0.04 -3.49 14 16 F -0.18 -3.69 17.04 2.25 0.04 -3.65 14 17 F -0.19 -3.59 17.04 2.25 0.04 -3.55 14 18 C -0.02 -0.40 6.66 -38.14 -0.25 -0.65 14 19 O -0.48 -10.62 11.75 -18.41 -0.22 -10.84 14 20 H 0.28 6.28 8.29 -40.82 -0.34 5.94 14 21 H 0.13 2.57 8.06 -52.49 -0.42 2.15 14 22 H 0.11 2.16 7.24 -52.49 -0.38 1.78 14 23 H 0.36 6.46 9.06 45.56 0.41 6.87 14 LS Contribution 228.83 15.07 3.45 3.45 Total: -1.00 -27.71 228.83 -3.30 -31.01 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 0.09 Total: 4.76 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.27 Total: -1.16 kcal Atomic # 7 Polarization: -29.64 SS G_CDS: 0.55 Total: -29.09 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.22 Total: -10.84 kcal Atomic # 9 Polarization: -10.80 SS G_CDS: 0.11 Total: -10.68 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.02 Total: 12.56 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -27.71 -3.30 -31.01 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306631162.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.175 kcal (2) G-P(sol) polarization free energy of solvation -27.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds