Wall clock time and date at job start Mon Mar 30 2020 03:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30763 * 1 3 3 Si 1.86801 * 119.99762 * 2 1 4 4 H 1.48501 * 109.47055 * 239.99637 * 3 2 1 5 5 H 1.48494 * 109.47312 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47074 * 119.99906 * 3 2 1 7 7 C 1.40055 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00552 * 180.02562 * 7 2 1 9 9 C 1.41039 * 119.99709 * 0.02562 * 7 2 1 10 10 N 1.33695 * 119.89486 * 0.02562 * 9 7 2 11 11 C 1.31340 * 121.57549 * 179.97438 * 10 9 7 12 12 C 1.38961 * 121.18362 * 359.74525 * 11 10 9 13 13 C 1.38597 * 119.65714 * 0.51373 * 12 11 10 14 14 C 1.50703 * 120.73013 * 179.77213 * 13 12 11 15 15 F 1.39905 * 109.47157 * 359.71816 * 14 13 12 16 16 F 1.39900 * 109.47159 * 239.72117 * 14 13 12 17 17 F 1.39897 * 109.47274 * 119.71808 * 14 13 12 18 18 C 1.38991 * 118.53904 * 359.49814 * 13 12 11 19 19 O 1.35573 * 120.58534 * 180.27494 * 18 13 12 20 20 H 0.96998 * 119.99592 * 0.02562 * 1 2 3 21 21 H 1.07995 * 119.40861 * 180.02562 * 11 10 9 22 22 H 1.07995 * 120.16720 * 180.25637 * 12 11 10 23 23 H 0.96697 * 114.00294 * 89.99953 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.0954 1.6964 -1.2125 5 1 1.2766 2.7465 -0.0006 6 1 3.0953 1.6965 1.2125 7 6 2.0080 -1.2129 0.0005 8 1 3.0880 -1.2129 0.0010 9 6 1.3028 -2.4343 0.0005 10 7 -0.0342 -2.4319 -0.0005 11 6 -0.7239 -3.5496 -0.0010 12 6 -0.0901 -4.7862 -0.0058 13 6 1.2945 -4.8472 0.0007 14 6 2.0068 -6.1753 0.0008 15 9 1.0648 -7.2097 0.0003 16 9 2.8078 -6.2747 1.1435 17 9 2.8089 -6.2744 -1.1411 18 6 2.0116 -3.6566 0.0012 19 8 3.3673 -3.6679 0.0018 20 1 -0.4849 0.8401 -0.0004 21 1 -1.8030 -3.5068 -0.0023 22 1 -0.6735 -5.6950 -0.0104 23 1 3.7611 -3.6710 -0.8813 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306631162.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:21 Heat of formation + Delta-G solvation = -184.425149 kcal Electronic energy + Delta-G solvation = -16365.149350 eV Core-core repulsion = 12955.768234 eV Total energy + Delta-G solvation = -3409.381116 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -51.12889 -48.65067 -48.59218 -40.62723 -37.68701 -35.76995 -33.19607 -31.27683 -27.88981 -26.96657 -23.47858 -23.15646 -20.08877 -19.53373 -19.46277 -19.04546 -18.05175 -17.36060 -16.51062 -16.12354 -15.54554 -15.41581 -15.31584 -15.05386 -14.83453 -14.78486 -14.50954 -14.01765 -13.63909 -13.28110 -12.97501 -12.88320 -12.50812 -12.13943 -11.59959 -11.35799 -10.47816 -9.71567 -9.59876 -8.44800 -6.63398 0.39848 0.65186 1.41437 1.52633 1.53965 1.71081 2.19169 2.66814 2.80591 3.14314 3.37381 3.48850 3.76074 4.21045 4.52010 4.65104 4.98510 5.13066 5.25244 5.34634 5.79237 6.14520 6.37902 6.69148 7.05090 7.92448 8.29351 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.043665 B = 0.008483 C = 0.007437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.096434 B = 3299.958571 C = 3764.003100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.022 3.978 3 Si 0.992 3.008 4 H -0.255 1.255 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.434 4.434 8 H 0.097 0.903 9 C 0.201 3.799 10 N -0.493 5.493 11 C 0.116 3.884 12 C -0.270 4.270 13 C -0.147 4.147 14 C 0.522 3.478 15 F -0.176 7.176 16 F -0.181 7.181 17 F -0.180 7.180 18 C -0.031 4.031 19 O -0.488 6.488 20 H 0.286 0.714 21 H 0.161 0.839 22 H 0.141 0.859 23 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.841 -3.965 -1.677 4.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.202 4.202 3 Si 0.811 3.189 4 H -0.179 1.179 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.464 4.464 8 H 0.115 0.885 9 C 0.077 3.923 10 N -0.208 5.208 11 C -0.049 4.049 12 C -0.293 4.293 13 C -0.155 4.155 14 C 0.468 3.532 15 F -0.157 7.157 16 F -0.162 7.162 17 F -0.161 7.161 18 C -0.081 4.081 19 O -0.297 6.297 20 H 0.097 0.903 21 H 0.179 0.821 22 H 0.159 0.841 23 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 1.218 -3.059 -1.066 3.461 hybrid contribution 0.805 -0.598 -0.468 1.107 sum 2.023 -3.657 -1.535 4.452 Atomic orbital electron populations 1.70171 1.08897 1.30066 1.26916 1.27069 0.95829 1.04705 0.92571 0.85105 0.78626 0.74931 0.80212 1.17944 1.18889 1.18555 1.19958 0.95457 0.89903 1.41063 0.88472 1.19315 0.88966 0.92396 0.91622 1.68784 1.06729 1.28310 1.16935 1.23144 1.00724 0.87700 0.93366 1.21407 0.91828 1.00162 1.15868 1.20556 0.96040 0.90629 1.08307 1.18086 0.76640 0.85030 0.73447 1.93121 1.64908 1.61428 1.96245 1.93171 1.75022 1.96655 1.51388 1.93141 1.75013 1.96686 1.51272 1.19148 0.83479 0.91758 1.13700 1.84688 1.15525 1.96195 1.33270 0.90264 0.82144 0.84107 0.76341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.31 11.46 21.84 0.25 -37.06 14 2 C 0.02 1.06 5.50 85.29 0.47 1.53 14 3 Si 0.99 35.78 29.56 68.60 2.03 37.81 14 4 H -0.26 -8.84 7.11 99.48 0.71 -8.13 14 5 H -0.26 -9.00 7.11 99.48 0.71 -8.29 14 6 H -0.26 -9.31 7.11 99.48 0.71 -8.61 14 7 C -0.43 -22.38 8.95 23.40 0.21 -22.17 14 8 H 0.10 4.74 7.32 -2.91 -0.02 4.72 14 9 C 0.20 10.69 6.56 40.30 0.26 10.95 14 10 N -0.49 -25.92 7.86 -188.72 -1.48 -27.40 14 11 C 0.12 5.19 11.18 84.94 0.95 6.14 14 12 C -0.27 -11.23 9.51 22.53 0.21 -11.01 14 13 C -0.15 -6.46 5.40 -19.60 -0.11 -6.56 14 14 C 0.52 20.02 3.02 71.24 0.22 20.23 14 15 F -0.18 -6.14 16.06 44.97 0.72 -5.42 14 16 F -0.18 -7.15 17.04 44.97 0.77 -6.38 14 17 F -0.18 -6.53 17.04 44.97 0.77 -5.76 14 18 C -0.03 -1.47 6.66 23.20 0.15 -1.32 14 19 O -0.49 -21.21 11.75 -88.80 -1.04 -22.25 14 20 H 0.29 12.93 8.29 -92.71 -0.77 12.16 14 21 H 0.16 5.99 8.06 -2.91 -0.02 5.97 14 22 H 0.14 4.97 7.24 -2.91 -0.02 4.94 14 23 H 0.38 13.30 9.06 -74.06 -0.67 12.63 14 Total: -1.00 -58.26 228.83 4.99 -53.27 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.61 Total: 15.40 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 2.37 Total: -2.21 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -1.23 Total: -64.46 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -1.04 Total: -22.25 kcal Atomic # 9 Polarization: -19.81 SS G_CDS: 2.25 Total: -17.56 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.81 kcal Total: -58.26 4.99 -53.27 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306631162.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.156 kcal (2) G-P(sol) polarization free energy of solvation -58.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds