Wall clock time and date at job start Mon Mar 30 2020 03:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86805 * 120.00079 * 2 1 4 4 H 1.48502 * 109.47175 * 269.99958 * 3 2 1 5 5 H 1.48499 * 109.47158 * 30.00160 * 3 2 1 6 6 H 1.48505 * 109.46668 * 150.00210 * 3 2 1 7 7 C 1.39943 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00124 * 163.14107 * 7 2 1 9 9 C 1.41211 * 119.99563 * 343.13795 * 7 2 1 10 10 C 1.40661 * 120.71517 * 335.28566 * 9 7 2 11 11 N 1.31467 * 120.44772 * 179.70249 * 10 9 7 12 12 C 1.32239 * 122.15914 * 0.02562 * 11 10 9 13 13 C 1.38156 * 121.41865 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.32425 * 180.02562 * 13 12 11 15 15 F 1.39904 * 109.46985 * 359.97438 * 14 13 12 16 16 F 1.39905 * 109.47039 * 119.99707 * 14 13 12 17 17 F 1.39894 * 109.46812 * 239.99710 * 14 13 12 18 18 C 1.38887 * 119.34963 * 0.02562 * 13 12 11 19 19 O 1.35527 * 120.97478 * 180.02562 * 18 13 12 20 20 H 0.97004 * 119.99661 * 0.02562 * 1 2 3 21 21 H 1.07993 * 119.77650 * 359.71877 * 10 9 7 22 22 H 1.08003 * 119.29255 * 180.02562 * 12 11 10 23 23 H 0.96706 * 113.99900 * 269.96087 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0465 -1.4001 5 1 1.4401 2.6527 0.7001 6 1 3.5403 1.4401 0.7000 7 6 2.0083 -1.2119 -0.0005 8 1 3.0535 -1.2319 -0.2718 9 6 1.3477 -2.4087 0.3537 10 6 0.2078 -2.3834 1.1773 11 7 -0.4066 -3.5002 1.4991 12 6 0.0096 -4.6807 1.0724 13 6 1.1202 -4.8021 0.2596 14 6 1.5725 -6.1597 -0.2129 15 9 0.7161 -7.1407 0.2985 16 9 1.5458 -6.1996 -1.6111 17 9 2.8758 -6.3991 0.2357 18 6 1.8156 -3.6606 -0.1178 19 8 2.9089 -3.7414 -0.9146 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1655 -1.4401 1.5477 22 1 -0.5306 -5.5689 1.3649 23 1 3.7409 -3.8417 -0.4318 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306644256.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:19 Heat of formation + Delta-G solvation = -176.879411 kcal Electronic energy + Delta-G solvation = -16368.850901 eV Core-core repulsion = 12959.796994 eV Total energy + Delta-G solvation = -3409.053908 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.52844 -47.08788 -46.96405 -38.98787 -36.15399 -34.32362 -31.00912 -30.21767 -25.86483 -25.19683 -21.79844 -21.47936 -18.28633 -17.95633 -17.85146 -17.44078 -16.43598 -15.67434 -14.90113 -14.84588 -13.91204 -13.80129 -13.47777 -13.43226 -13.21710 -13.18952 -12.96953 -12.32572 -12.08457 -11.84310 -11.54232 -11.41713 -11.04953 -10.65040 -9.67882 -9.53282 -8.56904 -8.40281 -7.95760 -7.16112 -4.73251 2.01785 2.37133 2.91142 2.93295 2.99008 3.36416 3.68556 4.27912 4.49191 4.75985 4.96021 5.08231 5.34889 5.79448 6.27281 6.43123 6.75682 6.79094 6.94684 7.21149 7.63098 7.99260 8.16576 8.38355 8.61293 9.31184 9.79875 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.043622 B = 0.008440 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.728524 B = 3316.764557 C = 3719.239212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.071 3.929 3 Si 0.922 3.078 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.424 4.424 8 H 0.089 0.911 9 C 0.038 3.962 10 C 0.078 3.922 11 N -0.475 5.475 12 C 0.007 3.993 13 C -0.224 4.224 14 C 0.517 3.483 15 F -0.187 7.187 16 F -0.179 7.179 17 F -0.188 7.188 18 C 0.054 3.946 19 O -0.480 6.480 20 H 0.291 0.709 21 H 0.162 0.838 22 H 0.137 0.863 23 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.471 -2.965 0.908 4.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.150 4.150 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.453 4.453 8 H 0.107 0.893 9 C 0.032 3.968 10 C -0.087 4.087 11 N -0.183 5.183 12 C -0.146 4.146 13 C -0.228 4.228 14 C 0.463 3.537 15 F -0.168 7.168 16 F -0.161 7.161 17 F -0.170 7.170 18 C 0.002 3.998 19 O -0.288 6.288 20 H 0.102 0.898 21 H 0.178 0.822 22 H 0.154 0.846 23 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.123 -2.799 0.941 3.637 hybrid contribution 1.485 0.354 -0.412 1.581 sum 3.608 -2.445 0.529 4.390 Atomic orbital electron populations 1.69744 1.07797 1.30576 1.32202 1.26080 0.94934 1.02061 0.91877 0.86073 0.80460 0.79345 0.79651 1.19068 1.19648 1.18120 1.19455 0.98248 0.90215 1.37347 0.89277 1.18860 0.94360 0.92155 0.91384 1.23227 0.93904 0.95394 0.96159 1.67327 1.30150 0.98309 1.22497 1.21542 0.96194 0.95874 1.01009 1.21022 1.04105 0.90337 1.07326 1.18350 0.74258 0.86096 0.75023 1.93095 1.70777 1.65821 1.87145 1.93178 1.96149 1.96919 1.29816 1.93122 1.39236 1.95422 1.89201 1.18414 0.92361 0.91076 0.97971 1.84758 1.15149 1.95353 1.33495 0.89792 0.82156 0.84610 0.77942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.44 10.95 55.55 0.61 -17.83 14 2 C 0.07 1.62 5.17 -17.33 -0.09 1.53 14 3 Si 0.92 16.93 29.59 -169.99 -5.03 11.90 14 4 H -0.27 -4.90 7.11 56.52 0.40 -4.50 14 5 H -0.27 -4.85 7.11 56.52 0.40 -4.45 14 6 H -0.26 -4.67 7.11 56.52 0.40 -4.27 14 7 C -0.42 -10.29 8.78 -37.82 -0.33 -10.62 14 8 H 0.09 2.06 7.72 -52.49 -0.41 1.66 14 9 C 0.04 0.95 5.60 -106.52 -0.60 0.35 14 10 C 0.08 1.95 9.88 -16.79 -0.17 1.79 14 11 N -0.47 -11.59 10.33 -12.65 -0.13 -11.72 14 12 C 0.01 0.16 10.58 -17.41 -0.18 -0.02 14 13 C -0.22 -5.03 5.39 -104.41 -0.56 -5.59 14 14 C 0.52 10.33 3.02 36.01 0.11 10.44 14 15 F -0.19 -3.47 15.98 2.25 0.04 -3.44 14 16 F -0.18 -3.69 17.02 2.25 0.04 -3.65 14 17 F -0.19 -3.53 17.02 2.25 0.04 -3.49 14 18 C 0.05 1.27 6.68 -38.01 -0.25 1.02 14 19 O -0.48 -10.36 12.02 -18.28 -0.22 -10.58 14 20 H 0.29 6.17 8.30 -40.82 -0.34 5.83 14 21 H 0.16 4.01 6.17 -52.49 -0.32 3.69 14 22 H 0.14 2.74 7.13 -52.48 -0.37 2.37 14 23 H 0.37 6.25 9.06 45.56 0.41 6.66 14 LS Contribution 227.69 15.07 3.43 3.43 Total: -1.00 -26.37 227.69 -3.13 -29.50 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 0.18 Total: 6.99 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.08 Total: -1.11 kcal Atomic # 7 Polarization: -30.03 SS G_CDS: 0.48 Total: -29.55 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -0.22 Total: -10.58 kcal Atomic # 9 Polarization: -10.70 SS G_CDS: 0.11 Total: -10.58 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -26.37 -3.13 -29.50 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306644256.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.382 kcal (2) G-P(sol) polarization free energy of solvation -26.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds