Wall clock time and date at job start Mon Mar 30 2020 03:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86803 * 120.00359 * 2 1 4 4 H 1.48502 * 109.46702 * 274.69160 * 3 2 1 5 5 H 1.48494 * 109.46921 * 34.68455 * 3 2 1 6 6 H 1.48491 * 109.47328 * 154.69106 * 3 2 1 7 7 C 1.39888 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00433 * 197.61649 * 7 2 1 9 9 C 1.41261 * 119.99513 * 17.61345 * 7 2 1 10 10 C 1.40773 * 120.57893 * 203.61104 * 9 7 2 11 11 N 1.31509 * 120.38650 * 180.02562 * 10 9 7 12 12 C 1.32541 * 121.77897 * 0.02562 * 11 10 9 13 13 O 1.35527 * 119.41759 * 179.97438 * 12 11 10 14 14 C 1.42898 * 117.00315 * 0.02562 * 13 12 11 15 15 F 1.39899 * 109.46902 * 299.99914 * 14 13 12 16 16 F 1.39900 * 109.47103 * 59.99657 * 14 13 12 17 17 C 1.39630 * 121.15643 * 359.97438 * 12 11 10 18 18 F 1.35100 * 120.26799 * 179.97438 * 17 12 11 19 19 C 1.36851 * 119.47315 * 359.97438 * 17 12 11 20 20 H 0.97006 * 119.99550 * 0.02562 * 1 2 3 21 21 H 1.08002 * 119.80026 * 359.74434 * 10 9 7 22 22 H 1.08999 * 109.47058 * 179.97438 * 14 13 12 23 23 H 1.07998 * 120.82096 * 180.02562 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3912 2.1036 -1.3954 5 1 1.4935 2.6220 0.7967 6 1 3.5865 1.4135 0.5985 7 6 2.0083 -1.2114 0.0005 8 1 3.0503 -1.2333 0.2836 9 6 1.3516 -2.4062 -0.3691 10 6 1.8306 -3.6535 0.0744 11 7 1.2165 -4.7635 -0.2724 12 6 0.1380 -4.7531 -1.0427 13 8 -0.4567 -5.9258 -1.3713 14 6 0.1327 -7.1198 -0.8526 15 9 1.4507 -7.2257 -1.3096 16 9 0.1262 -7.0738 0.5456 17 6 -0.3963 -3.5552 -1.5216 18 9 -1.4961 -3.5656 -2.3061 19 6 0.2031 -2.3705 -1.1901 20 1 -0.4850 0.8401 -0.0004 21 1 2.7101 -3.6992 0.6995 22 1 -0.4398 -7.9838 -1.1900 23 1 -0.1919 -1.4313 -1.5480 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306708207.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:43 Heat of formation + Delta-G solvation = -189.812870 kcal Electronic energy + Delta-G solvation = -16131.680763 eV Core-core repulsion = 12722.066018 eV Total energy + Delta-G solvation = -3409.614745 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.84218 -49.72980 -47.99176 -40.75558 -38.58989 -35.91072 -32.57368 -31.53246 -28.06704 -26.43072 -24.06033 -23.41536 -20.02379 -19.74588 -18.95601 -18.65346 -17.83931 -17.38045 -16.80094 -16.71355 -16.43500 -15.23851 -15.18963 -14.74970 -14.64744 -14.33656 -13.86954 -13.85137 -13.79466 -13.45454 -13.07629 -12.95183 -12.77560 -12.32762 -11.93551 -11.25608 -10.52526 -10.30919 -9.42144 -8.82945 -6.54442 0.40253 0.67137 1.42099 1.50367 1.57939 1.87903 2.16400 2.50947 2.80008 3.36473 3.44766 3.67540 3.94452 3.96807 4.34340 4.54662 4.82439 5.06385 5.12723 5.53412 5.67720 5.99014 6.34887 6.54967 6.58635 7.20505 8.11338 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.044884 B = 0.007561 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.677798 B = 3702.222081 C = 4086.757989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.033 3.967 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.249 1.249 7 C -0.452 4.452 8 H 0.105 0.895 9 C 0.049 3.951 10 C -0.004 4.004 11 N -0.476 5.476 12 C 0.106 3.894 13 O -0.334 6.334 14 C 0.416 3.584 15 F -0.214 7.214 16 F -0.215 7.215 17 C 0.067 3.933 18 F -0.148 7.148 19 C -0.172 4.172 20 H 0.298 0.702 21 H 0.162 0.838 22 H 0.232 0.768 23 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.802 -3.910 -1.227 4.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.185 4.185 3 Si 0.815 3.185 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.172 1.172 7 C -0.480 4.480 8 H 0.123 0.877 9 C 0.044 3.956 10 C -0.166 4.166 11 N -0.193 5.193 12 C -0.070 4.070 13 O -0.248 6.248 14 C 0.327 3.673 15 F -0.196 7.196 16 F -0.197 7.197 17 C 0.045 3.955 18 F -0.127 7.127 19 C -0.198 4.198 20 H 0.110 0.890 21 H 0.179 0.821 22 H 0.247 0.753 23 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.654 -4.631 -1.081 4.801 hybrid contribution -0.236 1.291 -0.194 1.327 sum 0.418 -3.341 -1.275 3.600 Atomic orbital electron populations 1.69833 1.09494 1.31929 1.31973 1.27027 0.95523 1.05364 0.90629 0.84956 0.79273 0.74679 0.79550 1.18659 1.19285 1.17236 1.19966 0.99144 0.90923 1.37986 0.87721 1.18616 0.91689 0.94943 0.90370 1.22658 1.02929 0.86325 1.04691 1.66832 1.06821 1.33861 1.11832 1.19001 0.97025 0.84273 1.06713 1.86538 1.53958 1.12789 1.71554 1.23984 0.79175 0.89990 0.74165 1.93022 1.41994 1.96071 1.88516 1.93024 1.96427 1.96719 1.33564 1.17447 0.87453 0.92959 0.97616 1.91361 1.51326 1.97399 1.72614 1.21362 1.00640 0.95432 1.02416 0.89039 0.82072 0.75265 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.49 10.92 21.82 0.24 -38.26 14 2 C 0.03 1.47 5.17 85.23 0.44 1.91 14 3 Si 1.00 33.47 29.59 68.60 2.03 35.50 14 4 H -0.26 -8.65 7.11 99.48 0.71 -7.94 14 5 H -0.27 -8.70 7.11 99.48 0.71 -7.99 14 6 H -0.25 -7.99 7.11 99.48 0.71 -7.29 14 7 C -0.45 -21.53 9.07 23.41 0.21 -21.32 14 8 H 0.10 4.57 7.90 -2.91 -0.02 4.54 14 9 C 0.05 2.48 5.59 -21.19 -0.12 2.36 14 10 C 0.00 -0.19 10.97 85.36 0.94 0.75 14 11 N -0.48 -23.45 8.01 -306.33 -2.45 -25.90 14 12 C 0.11 5.24 7.21 84.92 0.61 5.85 14 13 O -0.33 -14.12 10.26 -88.31 -0.91 -15.03 14 14 C 0.42 13.68 6.05 113.37 0.69 14.36 14 15 F -0.21 -7.89 16.55 44.97 0.74 -7.15 14 16 F -0.22 -8.07 16.56 44.97 0.74 -7.33 14 17 C 0.07 3.41 7.29 22.28 0.16 3.57 14 18 F -0.15 -7.13 17.11 44.97 0.77 -6.36 14 19 C -0.17 -8.94 8.73 22.68 0.20 -8.74 14 20 H 0.30 12.69 8.30 -92.70 -0.77 11.92 14 21 H 0.16 6.93 8.06 -2.91 -0.02 6.90 14 22 H 0.23 4.17 8.14 -2.39 -0.02 4.15 14 23 H 0.14 7.27 6.19 -2.91 -0.02 7.25 14 Total: -1.00 -59.79 229.00 5.56 -54.23 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.27 Total: 11.56 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 3.13 Total: -1.26 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: -2.22 Total: -64.16 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.91 Total: -15.03 kcal Atomic # 9 Polarization: -23.10 SS G_CDS: 2.26 Total: -20.84 kcal Atomic # 14 Polarization: 33.47 SS G_CDS: 2.03 Total: 35.50 kcal Total: -59.79 5.56 -54.23 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306708207.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.584 kcal (2) G-P(sol) polarization free energy of solvation -59.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds