Wall clock time and date at job start Mon Mar 30 2020 03:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86802 * 120.00362 * 2 1 4 4 H 1.48498 * 109.47287 * 239.99921 * 3 2 1 5 5 H 1.48499 * 109.47087 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47066 * 119.99888 * 3 2 1 7 7 C 1.39926 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00147 * 158.01677 * 7 2 1 9 9 C 1.41108 * 120.00539 * 338.01961 * 7 2 1 10 10 C 1.41018 * 120.72456 * 324.34877 * 9 7 2 11 11 F 1.35098 * 119.81193 * 0.03735 * 10 9 7 12 12 N 1.31705 * 120.37387 * 180.02562 * 10 9 7 13 13 C 1.32242 * 122.11556 * 359.97438 * 12 10 9 14 14 C 1.38149 * 121.45650 * 359.73601 * 13 12 10 15 15 C 1.38888 * 119.42240 * 0.52167 * 14 13 12 16 16 O 1.35539 * 120.95479 * 179.77644 * 15 14 13 17 17 C 1.42904 * 116.99863 * 359.71120 * 16 15 14 18 18 F 1.39897 * 109.46856 * 60.00650 * 17 16 15 19 19 F 1.39890 * 109.47363 * 300.00195 * 17 16 15 20 20 H 0.97005 * 119.99882 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.26894 * 180.02562 * 13 12 10 22 22 H 1.07998 * 120.28696 * 180.28944 * 14 13 12 23 23 H 1.09008 * 109.46830 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6963 -1.2125 5 1 1.2780 2.7465 0.0006 6 1 3.0967 1.6963 1.2126 7 6 2.0084 -1.2118 0.0005 8 1 3.0295 -1.2461 -0.3496 9 6 1.3798 -2.3893 0.4584 10 6 0.4658 -2.3475 1.5315 11 9 0.1858 -1.1690 2.1298 12 7 -0.1165 -3.4508 1.9536 13 6 0.1234 -4.6281 1.4011 14 6 0.9996 -4.7620 0.3414 15 6 1.6526 -3.6390 -0.1500 16 8 2.5219 -3.7355 -1.1854 17 6 2.7345 -5.0374 -1.7349 18 9 1.5220 -5.5451 -2.2136 19 9 3.2362 -5.8862 -0.7426 20 1 -0.4850 0.8401 -0.0004 21 1 -0.3802 -5.5034 1.7838 22 1 1.1780 -5.7320 -0.0985 23 1 3.4508 -4.9735 -2.5541 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306724208.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:36 Heat of formation + Delta-G solvation = -157.687021 kcal Electronic energy + Delta-G solvation = -16476.052239 eV Core-core repulsion = 13067.830576 eV Total energy + Delta-G solvation = -3408.221663 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.86238 -47.14859 -46.87706 -38.95824 -36.82324 -34.01279 -30.62772 -29.69303 -26.02867 -25.29364 -21.99115 -21.66866 -18.39533 -17.92935 -17.58957 -17.42083 -16.03277 -15.39956 -15.02163 -14.36025 -14.13681 -14.08466 -13.82193 -13.28882 -13.07167 -13.02334 -12.80847 -11.88359 -11.85362 -11.77226 -11.39221 -11.28868 -10.94927 -10.81887 -10.28589 -9.26004 -8.43274 -8.02098 -7.57515 -6.98887 -4.57307 2.36817 2.49682 3.02584 3.05491 3.11131 3.28214 3.85690 3.93338 4.46959 4.75910 5.02596 5.21971 5.27437 5.84923 5.97861 6.23317 6.70760 6.91442 7.05559 7.10044 7.67842 7.81352 8.13605 8.45908 8.58801 9.19079 10.00859 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.029546 B = 0.010618 C = 0.008503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.441206 B = 2636.310871 C = 3291.976193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.075 3.925 3 Si 0.918 3.082 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.443 4.443 8 H 0.092 0.908 9 C 0.049 3.951 10 C 0.248 3.752 11 F -0.113 7.113 12 N -0.510 5.510 13 C 0.021 3.979 14 C -0.212 4.212 15 C 0.036 3.964 16 O -0.302 6.302 17 C 0.408 3.592 18 F -0.206 7.206 19 F -0.208 7.208 20 H 0.290 0.710 21 H 0.137 0.863 22 H 0.119 0.881 23 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.757 -4.501 -3.797 7.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.147 4.147 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.471 4.471 8 H 0.110 0.890 9 C 0.043 3.957 10 C 0.090 3.910 11 F -0.092 7.092 12 N -0.226 5.226 13 C -0.134 4.134 14 C -0.233 4.233 15 C -0.014 4.014 16 O -0.218 6.218 17 C 0.316 3.684 18 F -0.188 7.188 19 F -0.190 7.190 20 H 0.101 0.899 21 H 0.154 0.846 22 H 0.137 0.863 23 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.040 -4.146 -3.201 6.615 hybrid contribution 0.602 0.484 -0.622 0.991 sum 4.642 -3.662 -3.823 7.041 Atomic orbital electron populations 1.69772 1.07983 1.30744 1.30532 1.25905 0.94705 1.01673 0.92384 0.86189 0.80099 0.79461 0.80111 1.18834 1.20098 1.18478 1.19223 1.00092 0.90822 1.36983 0.88961 1.17471 0.94515 0.91498 0.92243 1.17913 0.99912 0.80437 0.92765 1.91448 1.92452 1.43136 1.82174 1.66390 1.25431 0.98753 1.32057 1.21158 1.01768 0.93072 0.97382 1.21842 1.02503 0.97143 1.01826 1.18850 0.96918 0.94791 0.90807 1.86465 1.60943 1.26687 1.47740 1.23256 0.82395 0.76212 0.86502 1.93058 1.49621 1.87854 1.88295 1.93051 1.87344 1.72838 1.65764 0.89939 0.84560 0.86325 0.81448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.21 11.22 55.55 0.62 -19.58 14 2 C 0.08 1.89 4.46 -17.32 -0.08 1.82 14 3 Si 0.92 18.63 29.61 -169.99 -5.03 13.60 14 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 14 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 14 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 14 7 C -0.44 -11.65 8.56 -37.86 -0.32 -11.98 14 8 H 0.09 2.31 7.92 -52.48 -0.42 1.90 14 9 C 0.05 1.33 5.43 -106.45 -0.58 0.75 14 10 C 0.25 6.85 7.86 -16.55 -0.13 6.72 14 11 F -0.11 -3.15 14.31 2.25 0.03 -3.12 14 12 N -0.51 -13.33 10.34 -12.95 -0.13 -13.47 14 13 C 0.02 0.49 11.16 -17.41 -0.19 0.29 14 14 C -0.21 -4.76 8.32 -39.37 -0.33 -5.09 14 15 C 0.04 0.87 6.54 -38.04 -0.25 0.62 14 16 O -0.30 -6.38 9.96 -18.31 -0.18 -6.57 14 17 C 0.41 6.39 5.98 101.05 0.60 6.99 14 18 F -0.21 -3.50 15.62 2.25 0.04 -3.46 14 19 F -0.21 -3.42 15.65 2.25 0.04 -3.38 14 20 H 0.29 6.93 8.30 -40.82 -0.34 6.60 14 21 H 0.14 2.63 8.06 -52.49 -0.42 2.21 14 22 H 0.12 2.37 5.26 -52.49 -0.28 2.09 14 23 H 0.17 1.67 8.14 -51.92 -0.42 1.24 14 LS Contribution 224.01 15.07 3.38 3.38 Total: -1.00 -29.94 224.01 -3.20 -33.13 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -0.67 Total: -0.65 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.28 Total: 0.12 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.49 Total: -33.05 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.18 Total: -6.57 kcal Atomic # 9 Polarization: -10.07 SS G_CDS: 0.10 Total: -9.96 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -29.94 -3.20 -33.13 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306724208.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.556 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds