Wall clock time and date at job start Mon Mar 30 2020 03:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86799 * 119.99892 * 2 1 4 4 H 1.48495 * 109.47574 * 274.98934 * 3 2 1 5 5 H 1.48498 * 109.47092 * 34.99277 * 3 2 1 6 6 H 1.48509 * 109.47186 * 154.99021 * 3 2 1 7 7 C 1.40022 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00162 * 186.28607 * 7 2 1 9 9 C 1.41411 * 119.99601 * 6.27846 * 7 2 1 10 10 C 1.40429 * 119.78483 * 173.99072 * 9 7 2 11 11 C 1.38871 * 118.96219 * 180.22772 * 10 9 7 12 12 O 1.35766 * 120.74702 * 179.75531 * 11 10 9 13 13 C 1.42902 * 117.00071 * 179.72232 * 12 11 10 14 14 F 1.39895 * 109.47280 * 300.00086 * 13 12 11 15 15 F 1.39906 * 109.46830 * 60.00223 * 13 12 11 16 16 C 1.39396 * 118.50494 * 359.48755 * 11 10 9 17 17 C 1.38889 * 119.47307 * 0.26993 * 16 11 10 18 18 F 1.35104 * 119.49417 * 180.02562 * 17 16 11 19 19 N 1.31678 * 121.02043 * 359.97438 * 17 16 11 20 20 H 0.97001 * 120.00067 * 359.97438 * 1 2 3 21 21 H 1.07992 * 120.52075 * 0.02562 * 10 9 7 22 22 H 1.09000 * 109.46734 * 179.97438 * 13 12 11 23 23 H 1.08007 * 120.26111 * 180.29975 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1074 -1.3947 5 1 1.4956 2.6199 0.8029 6 1 3.5878 1.4121 0.5919 7 6 2.0076 -1.2126 -0.0005 8 1 3.0827 -1.2154 0.1019 9 6 1.3069 -2.4335 -0.1350 10 6 2.0199 -3.6366 -0.2622 11 6 1.3145 -4.8251 -0.3980 12 8 1.9671 -6.0085 -0.5285 13 6 1.1624 -7.1824 -0.6569 14 9 0.3556 -7.3211 0.4776 15 9 0.3540 -7.0716 -1.7934 16 6 -0.0786 -4.7764 -0.3918 17 6 -0.7189 -3.5513 -0.2568 18 9 -2.0691 -3.5037 -0.2502 19 7 -0.0304 -2.4356 -0.1342 20 1 -0.4850 0.8401 0.0004 21 1 3.0998 -3.6373 -0.2577 22 1 1.8071 -8.0560 -0.7537 23 1 -0.6554 -5.6842 -0.4906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306880069.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:20 Heat of formation + Delta-G solvation = -159.364917 kcal Electronic energy + Delta-G solvation = -16093.496463 eV Core-core repulsion = 12685.202040 eV Total energy + Delta-G solvation = -3408.294422 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.94115 -47.70930 -46.95979 -38.99414 -37.03709 -33.63782 -30.15582 -29.93663 -26.35213 -25.38121 -21.92160 -21.69659 -18.87411 -17.97500 -17.52711 -17.19188 -16.05215 -15.04132 -14.84126 -14.74369 -14.57466 -14.24613 -13.93331 -13.41458 -13.21508 -13.08071 -12.89019 -12.11351 -11.90092 -11.69279 -11.40031 -11.04412 -10.84476 -10.70076 -10.24938 -9.41595 -8.00421 -7.98362 -7.76422 -6.64453 -4.81990 2.45099 2.67035 2.99725 3.03782 3.04996 3.09812 3.79118 3.84740 4.47905 4.63008 4.97469 5.10507 5.56559 5.92817 6.10929 6.41497 6.73437 6.90488 7.08063 7.19999 7.38428 7.89248 7.98223 8.39985 8.62488 9.68329 10.08114 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.043070 B = 0.007654 C = 0.006779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.944301 B = 3657.214696 C = 4129.615384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.063 3.937 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.410 4.410 8 H 0.095 0.905 9 C 0.294 3.706 10 C -0.295 4.295 11 C 0.175 3.825 12 O -0.325 6.325 13 C 0.412 3.588 14 F -0.202 7.202 15 F -0.202 7.202 16 C -0.405 4.405 17 C 0.355 3.645 18 F -0.138 7.138 19 N -0.522 5.522 20 H 0.279 0.721 21 H 0.117 0.883 22 H 0.171 0.829 23 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.210 -7.142 -0.901 7.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.320 5.320 2 C -0.165 4.165 3 Si 0.740 3.260 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.440 4.440 8 H 0.113 0.887 9 C 0.170 3.830 10 C -0.318 4.318 11 C 0.127 3.873 12 O -0.242 6.242 13 C 0.322 3.678 14 F -0.184 7.184 15 F -0.184 7.184 16 C -0.431 4.431 17 C 0.192 3.808 18 F -0.117 7.117 19 N -0.242 5.242 20 H 0.090 0.910 21 H 0.135 0.865 22 H 0.187 0.813 23 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.733 -6.238 -0.806 6.858 hybrid contribution 0.067 -0.277 -0.134 0.315 sum 2.799 -6.515 -0.940 7.153 Atomic orbital electron populations 1.70138 1.07430 1.28623 1.25787 1.26201 0.95021 1.01637 0.93611 0.86160 0.80457 0.80102 0.79319 1.19195 1.19865 1.18194 1.19731 0.95087 0.88922 1.40240 0.88693 1.17973 0.85774 0.91408 0.87805 1.21115 0.99592 0.89927 1.21133 1.18506 0.90298 0.83362 0.95104 1.86505 1.35764 1.14033 1.87877 1.23148 0.81629 0.90868 0.72170 1.93077 1.76382 1.95936 1.52970 1.93080 1.76309 1.96577 1.52413 1.21083 0.93276 0.98484 1.30220 1.18122 0.77796 0.90244 0.94616 1.91463 1.29410 1.97228 1.93609 1.68149 1.08726 1.25126 1.22231 0.90970 0.86456 0.81293 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.38 11.49 55.55 0.64 -17.74 14 2 C 0.06 1.54 5.49 -17.35 -0.10 1.45 14 3 Si 0.92 17.71 29.56 -169.99 -5.03 12.68 14 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 14 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 14 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 14 7 C -0.41 -10.50 9.13 -37.71 -0.34 -10.84 14 8 H 0.10 2.21 7.85 -52.49 -0.41 1.80 14 9 C 0.29 7.95 6.54 -85.01 -0.56 7.39 14 10 C -0.29 -7.21 9.80 -38.52 -0.38 -7.59 14 11 C 0.17 4.07 6.51 -38.92 -0.25 3.81 14 12 O -0.32 -6.20 10.44 -19.01 -0.20 -6.39 14 13 C 0.41 6.13 5.98 101.05 0.60 6.73 14 14 F -0.20 -3.37 15.62 2.25 0.04 -3.34 14 15 F -0.20 -3.38 15.63 2.25 0.04 -3.34 14 16 C -0.41 -9.78 8.32 -38.91 -0.32 -10.11 14 17 C 0.36 9.43 8.40 -17.38 -0.15 9.29 14 18 F -0.14 -3.49 17.29 2.25 0.04 -3.45 14 19 N -0.52 -14.83 7.90 -11.52 -0.09 -14.92 14 20 H 0.28 6.57 8.29 -40.82 -0.34 6.24 14 21 H 0.12 2.61 8.06 -52.49 -0.42 2.19 14 22 H 0.17 1.45 8.14 -51.93 -0.42 1.02 14 23 H 0.12 2.67 5.25 -52.48 -0.28 2.40 14 LS Contribution 227.03 15.07 3.42 3.42 Total: -1.00 -29.94 227.03 -3.31 -33.25 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -0.67 Total: -0.30 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -1.49 Total: 0.13 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.55 Total: -32.66 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.20 Total: -6.39 kcal Atomic # 9 Polarization: -10.24 SS G_CDS: 0.11 Total: -10.13 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -29.94 -3.31 -33.25 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306880069.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.117 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds