Wall clock time and date at job start Mon Mar 30 2020 03:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86799 * 119.99892 * 2 1 4 4 H 1.48495 * 109.47574 * 274.98934 * 3 2 1 5 5 H 1.48498 * 109.47092 * 34.99277 * 3 2 1 6 6 H 1.48509 * 109.47186 * 154.99021 * 3 2 1 7 7 C 1.40022 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00162 * 186.28607 * 7 2 1 9 9 C 1.41411 * 119.99601 * 6.27846 * 7 2 1 10 10 C 1.40429 * 119.78483 * 173.99072 * 9 7 2 11 11 C 1.38871 * 118.96219 * 180.22772 * 10 9 7 12 12 O 1.35766 * 120.74702 * 179.75531 * 11 10 9 13 13 C 1.42902 * 117.00071 * 179.72232 * 12 11 10 14 14 F 1.39895 * 109.47280 * 300.00086 * 13 12 11 15 15 F 1.39906 * 109.46830 * 60.00223 * 13 12 11 16 16 C 1.39396 * 118.50494 * 359.48755 * 11 10 9 17 17 C 1.38889 * 119.47307 * 0.26993 * 16 11 10 18 18 F 1.35104 * 119.49417 * 180.02562 * 17 16 11 19 19 N 1.31678 * 121.02043 * 359.97438 * 17 16 11 20 20 H 0.97001 * 120.00067 * 359.97438 * 1 2 3 21 21 H 1.07992 * 120.52075 * 0.02562 * 10 9 7 22 22 H 1.09000 * 109.46734 * 179.97438 * 13 12 11 23 23 H 1.08007 * 120.26111 * 180.29975 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1074 -1.3947 5 1 1.4956 2.6199 0.8029 6 1 3.5878 1.4121 0.5919 7 6 2.0076 -1.2126 -0.0005 8 1 3.0827 -1.2154 0.1019 9 6 1.3069 -2.4335 -0.1350 10 6 2.0199 -3.6366 -0.2622 11 6 1.3145 -4.8251 -0.3980 12 8 1.9671 -6.0085 -0.5285 13 6 1.1624 -7.1824 -0.6569 14 9 0.3556 -7.3211 0.4776 15 9 0.3540 -7.0716 -1.7934 16 6 -0.0786 -4.7764 -0.3918 17 6 -0.7189 -3.5513 -0.2568 18 9 -2.0691 -3.5037 -0.2502 19 7 -0.0304 -2.4356 -0.1342 20 1 -0.4850 0.8401 0.0004 21 1 3.0998 -3.6373 -0.2577 22 1 1.8071 -8.0560 -0.7537 23 1 -0.6554 -5.6842 -0.4906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306880069.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:20 Heat of formation + Delta-G solvation = -179.232060 kcal Electronic energy + Delta-G solvation = -16094.357967 eV Core-core repulsion = 12685.202040 eV Total energy + Delta-G solvation = -3409.155926 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.20897 -49.72200 -48.23440 -40.74476 -38.78122 -35.50785 -32.01291 -31.87484 -28.13459 -26.84995 -23.83268 -23.48263 -20.55195 -19.51303 -18.82037 -18.81489 -17.84697 -16.77203 -16.73641 -16.69753 -16.34014 -15.92908 -15.37725 -14.82240 -14.74440 -14.56463 -14.52945 -13.84059 -13.52199 -13.30230 -13.12701 -12.73738 -12.68343 -12.36521 -11.87738 -11.21461 -9.95929 -9.88201 -9.72386 -8.49403 -6.77704 0.51225 0.78590 1.42603 1.52122 1.59673 1.73565 2.19604 2.61876 2.62388 3.13862 3.56008 3.62458 3.78152 4.12105 4.23751 4.51313 4.95296 5.04137 5.18136 5.32372 5.47890 6.02915 6.11671 6.51160 6.67904 7.71628 8.27915 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.043070 B = 0.007654 C = 0.006779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.944301 B = 3657.214696 C = 4129.615384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.017 3.983 3 Si 1.001 2.999 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.245 1.245 7 C -0.432 4.432 8 H 0.113 0.887 9 C 0.261 3.739 10 C -0.305 4.305 11 C 0.182 3.818 12 O -0.323 6.323 13 C 0.403 3.597 14 F -0.213 7.213 15 F -0.213 7.213 16 C -0.403 4.403 17 C 0.331 3.669 18 F -0.140 7.140 19 N -0.558 5.558 20 H 0.286 0.714 21 H 0.137 0.863 22 H 0.245 0.755 23 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.866 -7.528 -1.022 9.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.207 4.207 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.167 1.167 7 C -0.461 4.461 8 H 0.131 0.869 9 C 0.138 3.862 10 C -0.328 4.328 11 C 0.134 3.866 12 O -0.240 6.240 13 C 0.315 3.685 14 F -0.195 7.195 15 F -0.195 7.195 16 C -0.429 4.429 17 C 0.169 3.831 18 F -0.119 7.119 19 N -0.280 5.280 20 H 0.097 0.903 21 H 0.155 0.845 22 H 0.260 0.740 23 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.385 -6.668 -0.928 8.034 hybrid contribution -0.467 -0.294 -0.105 0.561 sum 3.918 -6.961 -1.034 8.055 Atomic orbital electron populations 1.70245 1.09535 1.30164 1.26660 1.27292 0.95731 1.05458 0.92205 0.84908 0.79206 0.74446 0.79478 1.18659 1.19363 1.16744 1.20249 0.96144 0.89383 1.40341 0.86872 1.18488 0.85786 0.93157 0.88733 1.21282 1.00528 0.89885 1.21105 1.18482 0.89810 0.84888 0.93451 1.86513 1.36452 1.13672 1.87369 1.24407 0.82111 0.90922 0.71086 1.93056 1.76952 1.95795 1.53699 1.93058 1.76883 1.96545 1.53038 1.21214 0.94006 0.97976 1.29676 1.18454 0.77967 0.91046 0.95668 1.91443 1.29439 1.97290 1.93734 1.68082 1.09795 1.26311 1.23817 0.90324 0.84550 0.73965 0.85008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.89 11.49 21.84 0.25 -39.64 14 2 C 0.02 0.82 5.49 85.29 0.47 1.29 14 3 Si 1.00 35.64 29.56 68.60 2.03 37.66 14 4 H -0.26 -9.06 7.11 99.48 0.71 -8.35 14 5 H -0.27 -9.28 7.11 99.48 0.71 -8.57 14 6 H -0.24 -8.09 7.11 99.48 0.71 -7.38 14 7 C -0.43 -22.15 9.13 23.48 0.21 -21.94 14 8 H 0.11 5.16 7.85 -2.91 -0.02 5.14 14 9 C 0.26 14.34 6.54 40.17 0.26 14.60 14 10 C -0.31 -14.84 9.80 22.96 0.22 -14.62 14 11 C 0.18 8.31 6.51 22.70 0.15 8.45 14 12 O -0.32 -11.52 10.44 -90.93 -0.95 -12.47 14 13 C 0.40 10.66 5.98 113.37 0.68 11.33 14 14 F -0.21 -6.61 15.62 44.97 0.70 -5.91 14 15 F -0.21 -6.63 15.63 44.97 0.70 -5.92 14 16 C -0.40 -19.40 8.32 22.70 0.19 -19.21 14 17 C 0.33 17.95 8.40 84.87 0.71 18.66 14 18 F -0.14 -7.27 17.29 44.97 0.78 -6.49 14 19 N -0.56 -32.59 7.90 -190.34 -1.50 -34.10 14 20 H 0.29 13.72 8.29 -92.71 -0.77 12.95 14 21 H 0.14 5.92 8.06 -2.91 -0.02 5.89 14 22 H 0.24 2.81 8.14 -2.39 -0.02 2.79 14 23 H 0.13 5.85 5.25 -2.91 -0.02 5.84 14 Total: -1.00 -66.15 227.03 6.18 -59.97 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.27 Total: 8.31 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 2.90 Total: -1.42 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -1.25 Total: -73.73 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.95 Total: -12.47 kcal Atomic # 9 Polarization: -20.50 SS G_CDS: 2.18 Total: -18.32 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.03 Total: 37.66 kcal Total: -66.15 6.18 -59.97 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306880069.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.259 kcal (2) G-P(sol) polarization free energy of solvation -66.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds