Wall clock time and date at job start Mon Mar 30 2020 03:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86799 * 120.00117 * 2 1 4 4 H 1.48497 * 109.46881 * 270.78368 * 3 2 1 5 5 H 1.48507 * 109.46787 * 30.78084 * 3 2 1 6 6 H 1.48497 * 109.47291 * 150.77587 * 3 2 1 7 7 C 1.39942 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99823 * 340.16537 * 7 2 1 9 9 C 1.41415 * 120.00231 * 160.16816 * 7 2 1 10 10 C 1.41009 * 120.62902 * 332.37758 * 9 7 2 11 11 C 1.38479 * 118.15646 * 180.02562 * 10 9 7 12 12 O 1.35915 * 120.34683 * 179.97438 * 11 10 9 13 13 C 1.39155 * 119.31134 * 359.97438 * 11 10 9 14 14 N 1.32006 * 121.23530 * 359.97438 * 13 11 10 15 15 C 1.31489 * 122.03729 * 0.02562 * 14 13 11 16 16 C 1.50701 * 119.73697 * 180.27142 * 15 14 13 17 17 F 1.39900 * 109.47242 * 242.93648 * 16 15 14 18 18 F 1.39898 * 109.47238 * 2.93859 * 16 15 14 19 19 F 1.39902 * 109.46815 * 122.94088 * 16 15 14 20 20 H 0.96999 * 120.00120 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.92614 * 0.02562 * 10 9 7 22 22 H 0.96701 * 114.00483 * 89.99816 * 12 11 10 23 23 H 1.08003 * 119.38081 * 180.02562 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4732 2.0559 -1.3999 5 1 1.4481 2.6478 0.7165 6 1 3.5480 1.4355 0.6835 7 6 2.0080 -1.2119 0.0005 8 1 1.5161 -2.1193 0.3183 9 6 3.3593 -1.2485 -0.4149 10 6 3.8529 -0.3037 -1.3380 11 6 5.1842 -0.3872 -1.7098 12 8 5.7064 0.5003 -2.5969 13 6 5.9819 -1.3893 -1.1658 14 7 5.4932 -2.2602 -0.3024 15 6 4.2373 -2.2279 0.0858 16 6 3.7356 -3.2442 1.0789 17 9 2.7431 -4.0290 0.4820 18 9 4.7954 -4.0621 1.4850 19 9 3.2023 -2.5850 2.1917 20 1 -0.4850 0.8400 -0.0004 21 1 3.2105 0.4639 -1.7438 22 1 6.0773 1.2939 -2.1873 23 1 7.0205 -1.4552 -1.4546 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306933829.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:25 Heat of formation + Delta-G solvation = -192.338726 kcal Electronic energy + Delta-G solvation = -16581.501352 eV Core-core repulsion = 13171.777078 eV Total energy + Delta-G solvation = -3409.724274 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.92305 -48.44221 -48.39391 -40.96865 -38.15547 -36.14033 -33.42909 -31.84942 -28.29131 -26.49236 -24.18518 -22.99706 -20.05525 -19.41973 -19.31516 -19.29781 -18.69645 -17.50627 -16.78314 -16.07716 -15.72885 -15.34513 -15.26351 -14.90193 -14.81683 -14.60798 -14.56277 -14.41847 -14.15730 -13.70488 -13.15769 -13.01357 -12.70813 -12.06523 -11.86895 -11.47324 -10.49193 -10.22002 -9.84173 -9.17991 -6.88889 0.05319 0.51037 1.17895 1.32713 1.41512 1.89191 1.97372 2.30073 2.89733 2.99070 3.32414 3.33605 3.73612 4.12131 4.19037 4.42216 4.66679 4.88010 5.25387 5.29149 5.58565 5.91982 6.11743 6.38340 6.82081 7.15108 7.86295 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.020998 B = 0.015688 C = 0.010023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.164523 B = 1784.375684 C = 2793.042837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.052 3.948 3 Si 0.964 3.036 4 H -0.242 1.242 5 H -0.264 1.264 6 H -0.253 1.253 7 C -0.441 4.441 8 H 0.079 0.921 9 C 0.075 3.925 10 C -0.246 4.246 11 C 0.137 3.863 12 O -0.499 6.499 13 C -0.050 4.050 14 N -0.410 5.410 15 C -0.127 4.127 16 C 0.539 3.461 17 F -0.188 7.188 18 F -0.178 7.178 19 F -0.180 7.180 20 H 0.308 0.692 21 H 0.133 0.867 22 H 0.413 0.587 23 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.044 4.077 -0.414 7.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.170 4.170 3 Si 0.785 3.215 4 H -0.166 1.166 5 H -0.189 1.189 6 H -0.177 1.177 7 C -0.467 4.467 8 H 0.097 0.903 9 C 0.070 3.930 10 C -0.272 4.272 11 C 0.090 3.910 12 O -0.311 6.311 13 C -0.212 4.212 14 N -0.119 5.119 15 C -0.267 4.267 16 C 0.485 3.515 17 F -0.170 7.170 18 F -0.160 7.160 19 F -0.161 7.161 20 H 0.119 0.881 21 H 0.150 0.850 22 H 0.273 0.727 23 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 6.061 3.092 -0.443 6.819 hybrid contribution -0.726 1.056 0.209 1.298 sum 5.335 4.148 -0.235 6.762 Atomic orbital electron populations 1.69664 1.09329 1.33069 1.29921 1.27022 0.95532 1.04625 0.89863 0.85551 0.79645 0.75706 0.80600 1.16632 1.18941 1.17714 1.19761 0.93737 0.97250 1.35967 0.90303 1.18057 0.93161 0.91161 0.90645 1.21904 0.97074 1.05231 1.03011 1.19283 0.91263 0.91840 0.88605 1.84663 1.79306 1.33929 1.33195 1.22639 1.01118 0.96418 1.01063 1.66522 1.12943 1.22977 1.09445 1.20578 0.92457 1.04920 1.08734 1.17653 0.74472 0.79617 0.79799 1.93124 1.63556 1.76354 1.83920 1.93106 1.56963 1.74515 1.91390 1.93144 1.86959 1.81085 1.54955 0.88090 0.84962 0.72714 0.80646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.82 13.93 21.83 0.30 -38.52 14 2 C 0.05 2.47 5.41 85.25 0.46 2.93 14 3 Si 0.96 36.84 24.60 68.60 1.69 38.53 14 4 H -0.24 -8.44 6.43 99.48 0.64 -7.80 14 5 H -0.26 -9.30 7.11 99.48 0.71 -8.60 14 6 H -0.25 -9.97 7.06 99.48 0.70 -9.27 14 7 C -0.44 -22.80 8.21 23.47 0.19 -22.61 14 8 H 0.08 4.43 6.39 -2.91 -0.02 4.41 14 9 C 0.08 3.69 5.13 -21.21 -0.11 3.58 14 10 C -0.25 -10.73 7.40 23.01 0.17 -10.56 14 11 C 0.14 5.22 6.73 22.55 0.15 5.37 14 12 O -0.50 -14.92 13.52 -92.60 -1.25 -16.17 14 13 C -0.05 -1.95 11.13 84.89 0.94 -1.00 14 14 N -0.41 -18.41 9.71 -181.34 -1.76 -20.17 14 15 C -0.13 -6.10 6.33 43.22 0.27 -5.83 14 16 C 0.54 25.02 2.82 71.24 0.20 25.22 14 17 F -0.19 -8.82 15.93 44.97 0.72 -8.10 14 18 F -0.18 -7.73 16.86 44.97 0.76 -6.97 14 19 F -0.18 -8.38 16.27 44.97 0.73 -7.64 14 20 H 0.31 13.07 8.30 -92.71 -0.77 12.30 14 21 H 0.13 5.53 4.52 -2.91 -0.01 5.51 14 22 H 0.41 7.63 9.06 -74.06 -0.67 6.95 14 23 H 0.18 5.47 8.06 -2.91 -0.02 5.44 14 Total: -1.00 -57.03 220.88 4.02 -53.01 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.55 Total: 8.96 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 2.29 Total: -2.91 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -1.46 Total: -58.69 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -1.25 Total: -16.17 kcal Atomic # 9 Polarization: -24.93 SS G_CDS: 2.21 Total: -22.72 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 1.69 Total: 38.53 kcal Total: -57.03 4.02 -53.01 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306933829.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.334 kcal (2) G-P(sol) polarization free energy of solvation -57.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds