Wall clock time and date at job start Mon Mar 30 2020 03:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30776 * 1 3 3 Si 1.86801 * 119.99739 * 2 1 4 4 H 1.48499 * 109.46932 * 269.99579 * 3 2 1 5 5 H 1.48490 * 109.47548 * 30.00009 * 3 2 1 6 6 H 1.48508 * 109.47099 * 150.00228 * 3 2 1 7 7 C 1.40006 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99965 * 180.02562 * 7 2 1 9 9 C 1.41163 * 119.99757 * 359.97438 * 7 2 1 10 10 C 1.40786 * 119.74541 * 180.24462 * 9 7 2 11 11 C 1.36857 * 119.19626 * 180.27691 * 10 9 7 12 12 C 1.39605 * 118.66501 * 359.48756 * 11 10 9 13 13 O 1.35680 * 120.28478 * 180.22931 * 12 11 10 14 14 C 1.39508 * 119.42610 * 0.25660 * 12 11 10 15 15 C 1.50703 * 119.61362 * 179.97438 * 14 12 11 16 16 F 1.39900 * 109.46981 * 89.99880 * 15 14 12 17 17 F 1.39895 * 109.47301 * 209.99684 * 15 14 12 18 18 F 1.39899 * 109.47003 * 329.99857 * 15 14 12 19 19 N 1.31343 * 120.77296 * 0.02562 * 14 12 11 20 20 H 0.97004 * 120.00233 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.40640 * 0.03838 * 10 9 7 22 22 H 1.08002 * 120.67136 * 179.76945 * 11 10 9 23 23 H 0.96700 * 113.99703 * 90.00412 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.4892 2.0464 -1.4001 5 1 1.4392 2.6527 0.7000 6 1 3.5393 1.4403 0.7000 7 6 2.0078 -1.2125 0.0005 8 1 3.0878 -1.2124 0.0010 9 6 1.3020 -2.4350 0.0016 10 6 2.0113 -3.6511 0.0074 11 6 1.3157 -4.8297 0.0026 12 6 -0.0796 -4.7838 0.0031 13 8 -0.8020 -5.9323 0.0032 14 6 -0.7247 -3.5468 0.0030 15 6 -2.2308 -3.4923 0.0029 16 9 -2.6968 -3.4754 1.3219 17 9 -2.6555 -2.3340 -0.6566 18 9 -2.7380 -4.6171 -0.6565 19 7 -0.0348 -2.4291 0.0019 20 1 -0.4851 0.8401 0.0004 21 1 3.0913 -3.6539 0.0116 22 1 1.8356 -5.7763 0.0031 23 1 -1.0111 -6.2653 0.8866 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306944413.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:17 Heat of formation + Delta-G solvation = -183.367719 kcal Electronic energy + Delta-G solvation = -16523.615995 eV Core-core repulsion = 13114.280733 eV Total energy + Delta-G solvation = -3409.335262 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.99630 -48.53358 -48.45784 -40.66570 -37.89766 -35.40609 -33.21657 -31.50748 -28.30163 -26.48109 -23.66140 -23.01833 -19.95860 -19.45520 -19.28749 -19.07696 -18.51914 -16.98093 -16.56391 -16.10645 -15.46224 -15.30631 -15.21906 -14.95066 -14.67514 -14.62227 -14.23979 -14.15874 -13.67266 -13.35639 -12.86797 -12.83621 -12.55758 -12.03197 -11.73047 -11.25970 -10.49221 -9.78684 -9.66878 -8.44458 -6.62406 0.31703 0.84750 1.42697 1.49676 1.57763 1.76011 2.19537 2.58265 2.80141 3.26810 3.37536 3.54432 3.80754 4.25809 4.59672 4.66979 4.87959 5.17106 5.33696 5.46898 5.77706 6.05950 6.50075 6.69510 7.01567 7.74306 8.31498 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.032695 B = 0.010266 C = 0.008219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.185598 B = 2726.720339 C = 3405.858494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.018 3.982 3 Si 0.994 3.006 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.439 4.439 8 H 0.108 0.892 9 C 0.208 3.792 10 C -0.235 4.235 11 C -0.072 4.072 12 C -0.064 4.064 13 O -0.489 6.489 14 C 0.027 3.973 15 C 0.523 3.477 16 F -0.183 7.183 17 F -0.180 7.180 18 F -0.166 7.166 19 N -0.475 5.475 20 H 0.283 0.717 21 H 0.138 0.862 22 H 0.152 0.848 23 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 -3.228 1.604 3.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.205 4.205 3 Si 0.813 3.187 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.469 4.469 8 H 0.126 0.874 9 C 0.084 3.916 10 C -0.258 4.258 11 C -0.096 4.096 12 C -0.116 4.116 13 O -0.297 6.297 14 C -0.120 4.120 15 C 0.468 3.532 16 F -0.165 7.165 17 F -0.161 7.161 18 F -0.148 7.148 19 N -0.190 5.190 20 H 0.094 0.906 21 H 0.156 0.844 22 H 0.169 0.831 23 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.277 -2.235 0.991 2.460 hybrid contribution 0.093 -0.183 0.504 0.544 sum 0.370 -2.417 1.494 2.866 Atomic orbital electron populations 1.70222 1.09185 1.29884 1.27546 1.27146 0.95694 1.05130 0.92539 0.85023 0.79061 0.75092 0.79504 1.18780 1.19705 1.17096 1.20141 0.95606 0.89639 1.41528 0.87362 1.19044 0.87164 0.94362 0.91056 1.21881 1.00872 0.92162 1.10854 1.21270 0.92068 0.99242 0.96995 1.18648 0.90880 0.84516 1.17519 1.84826 1.73393 1.37925 1.33586 1.21708 0.92600 0.92412 1.05249 1.18154 0.88428 0.73211 0.73404 1.93127 1.90356 1.96270 1.36724 1.93156 1.91436 1.50438 1.81092 1.93178 1.88738 1.51867 1.80974 1.68271 1.09032 1.24835 1.16864 0.90588 0.84425 0.83053 0.76268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.28 11.45 21.84 0.25 -39.03 14 2 C 0.02 0.87 5.50 85.28 0.47 1.34 14 3 Si 0.99 35.61 29.56 68.60 2.03 37.64 14 4 H -0.26 -9.19 7.11 99.48 0.71 -8.49 14 5 H -0.27 -9.56 7.11 99.48 0.71 -8.86 14 6 H -0.25 -8.30 7.11 99.48 0.71 -7.60 14 7 C -0.44 -21.82 9.13 23.42 0.21 -21.61 14 8 H 0.11 4.80 7.85 -2.91 -0.02 4.77 14 9 C 0.21 10.79 6.55 40.20 0.26 11.05 14 10 C -0.23 -10.26 9.77 22.57 0.22 -10.04 14 11 C -0.07 -2.90 10.06 22.28 0.22 -2.68 14 12 C -0.06 -2.80 6.65 22.91 0.15 -2.64 14 13 O -0.49 -18.17 11.44 -89.98 -1.03 -19.20 14 14 C 0.03 1.34 6.32 42.94 0.27 1.61 14 15 C 0.52 23.83 3.35 71.24 0.24 24.07 14 16 F -0.18 -7.88 17.30 44.97 0.78 -7.11 14 17 F -0.18 -8.75 17.03 44.97 0.77 -7.98 14 18 F -0.17 -6.94 15.29 44.97 0.69 -6.26 14 19 N -0.48 -25.97 7.45 -176.74 -1.32 -27.29 14 20 H 0.28 13.59 8.30 -92.71 -0.77 12.82 14 21 H 0.14 5.17 8.06 -2.91 -0.02 5.15 14 22 H 0.15 4.85 8.06 -2.91 -0.02 4.83 14 23 H 0.38 10.61 9.06 -74.06 -0.67 9.94 14 Total: -1.00 -60.39 229.49 4.83 -55.56 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.61 Total: 12.57 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 2.05 Total: 1.09 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -1.07 Total: -66.32 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -1.03 Total: -19.20 kcal Atomic # 9 Polarization: -23.58 SS G_CDS: 2.23 Total: -21.34 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -60.39 4.83 -55.56 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306944413.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.806 kcal (2) G-P(sol) polarization free energy of solvation -60.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds