Wall clock time and date at job start Mon Mar 30 2020 03:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86804 * 120.00094 * 2 1 4 4 H 1.48500 * 109.47261 * 240.00015 * 3 2 1 5 5 H 1.48502 * 109.46872 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46982 * 120.00003 * 3 2 1 7 7 C 1.40023 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99922 * 179.97438 * 7 2 1 9 9 C 1.41355 * 119.99909 * 0.02562 * 7 2 1 10 10 C 1.40509 * 119.78474 * 179.97438 * 9 7 2 11 11 C 1.38597 * 119.06923 * 179.97438 * 10 9 7 12 12 F 1.35103 * 120.69580 * 179.97438 * 11 10 9 13 13 C 1.38973 * 118.60642 * 359.97438 * 11 10 9 14 14 C 1.39406 * 119.47702 * 0.25737 * 13 11 10 15 15 O 1.35621 * 119.54120 * 179.74147 * 14 13 11 16 16 C 1.42907 * 116.99500 * 179.97438 * 15 14 13 17 17 F 1.39902 * 109.47243 * 300.00108 * 16 15 14 18 18 F 1.39897 * 109.47234 * 60.00356 * 16 15 14 19 19 N 1.31856 * 120.90636 * 359.49211 * 14 13 11 20 20 H 0.97003 * 120.00174 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.45946 * 359.97438 * 10 9 7 22 22 H 1.08002 * 120.25791 * 179.97438 * 13 11 10 23 23 H 1.09000 * 109.46635 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0075 -1.2126 -0.0005 8 1 3.0875 -1.2126 -0.0010 9 6 1.3008 -2.4368 -0.0016 10 6 2.0079 -3.6510 -0.0027 11 6 1.3000 -4.8425 -0.0032 12 9 1.9465 -6.0288 -0.0048 13 6 -0.0888 -4.7914 -0.0021 14 6 -0.7297 -3.5534 -0.0060 15 8 -2.0849 -3.5020 -0.0102 16 6 -2.6848 -2.2050 -0.0135 17 9 -2.2856 -1.5036 1.1293 18 9 -2.2786 -1.5061 -1.1552 19 7 -0.0363 -2.4318 -0.0006 20 1 -0.4850 0.8401 0.0004 21 1 3.0879 -3.6556 -0.0031 22 1 -0.6670 -5.7036 -0.0029 23 1 -3.7701 -2.3067 -0.0162 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307001258.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:25 Heat of formation + Delta-G solvation = -180.827486 kcal Electronic energy + Delta-G solvation = -16537.349004 eV Core-core repulsion = 13128.123894 eV Total energy + Delta-G solvation = -3409.225109 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.80158 -49.53442 -47.70113 -40.65657 -38.37084 -35.43314 -32.09217 -31.66215 -28.13967 -26.62748 -23.57549 -23.37468 -20.22589 -19.59338 -18.40906 -18.38365 -17.25185 -17.10918 -16.62635 -16.53601 -16.26920 -15.62417 -15.30901 -14.79561 -14.43835 -14.40157 -14.00604 -13.62944 -13.28211 -13.12843 -12.79661 -12.65920 -12.56922 -12.33758 -11.87861 -11.13194 -10.02306 -9.94168 -9.50297 -8.41274 -6.70349 0.67851 0.74305 1.43505 1.54311 1.55756 1.86726 2.21053 2.70574 3.01513 3.55560 3.64704 3.91061 4.13468 4.17180 4.44661 4.57775 4.69273 5.10774 5.26723 5.39434 5.73174 5.95999 6.22053 6.56110 6.79105 7.80444 8.32339 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.013607 C = 0.008690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.400274 B = 2057.325684 C = 3221.227460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.019 3.981 3 Si 0.992 3.008 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.432 4.432 8 H 0.102 0.898 9 C 0.260 3.740 10 C -0.340 4.340 11 C 0.174 3.826 12 F -0.142 7.142 13 C -0.366 4.366 14 C 0.333 3.667 15 O -0.335 6.335 16 C 0.420 3.580 17 F -0.207 7.207 18 F -0.207 7.207 19 N -0.541 5.541 20 H 0.282 0.718 21 H 0.128 0.872 22 H 0.135 0.865 23 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.929 0.618 -0.030 3.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.207 4.207 3 Si 0.812 3.188 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.462 4.462 8 H 0.120 0.880 9 C 0.137 3.863 10 C -0.363 4.363 11 C 0.150 3.850 12 F -0.121 7.121 13 C -0.390 4.390 14 C 0.146 3.854 15 O -0.248 6.248 16 C 0.331 3.669 17 F -0.189 7.189 18 F -0.189 7.189 19 N -0.268 5.268 20 H 0.093 0.907 21 H 0.145 0.855 22 H 0.153 0.847 23 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -4.673 1.344 -0.026 4.862 hybrid contribution 0.905 -0.303 -0.002 0.955 sum -3.768 1.041 -0.028 3.909 Atomic orbital electron populations 1.70202 1.08579 1.29657 1.24708 1.27048 0.95915 1.04553 0.93137 0.85100 0.78541 0.75057 0.80118 1.18242 1.19388 1.18249 1.20088 0.95359 0.89614 1.41113 0.88000 1.18370 0.86712 0.92759 0.88459 1.21776 1.00482 0.91613 1.22441 1.17300 0.89837 0.80156 0.97719 1.91395 1.81696 1.45138 1.93889 1.20157 0.92365 0.96967 1.29478 1.19725 0.83483 0.90751 0.91456 1.86593 1.17775 1.32210 1.88217 1.23822 0.97095 0.74211 0.71821 1.93051 1.93418 1.80145 1.52278 1.93048 1.93255 1.80264 1.52348 1.68429 1.09132 1.24560 1.24719 0.90674 0.85450 0.84704 0.75988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -36.10 10.91 21.84 0.24 -35.86 14 2 C 0.02 0.93 5.50 85.29 0.47 1.40 14 3 Si 0.99 35.98 29.56 68.60 2.03 38.01 14 4 H -0.26 -9.08 7.11 99.48 0.71 -8.37 14 5 H -0.27 -9.38 7.11 99.48 0.71 -8.68 14 6 H -0.26 -9.08 7.11 99.48 0.71 -8.37 14 7 C -0.43 -22.23 9.14 23.47 0.21 -22.01 14 8 H 0.10 4.79 7.85 -2.91 -0.02 4.77 14 9 C 0.26 14.12 6.55 40.18 0.26 14.38 14 10 C -0.34 -16.96 9.83 22.91 0.23 -16.73 14 11 C 0.17 8.28 7.37 22.53 0.17 8.44 14 12 F -0.14 -6.11 17.29 44.97 0.78 -5.34 14 13 C -0.37 -17.24 10.05 22.73 0.23 -17.01 14 14 C 0.33 16.60 7.20 84.97 0.61 17.21 14 15 O -0.34 -14.22 10.41 -89.33 -0.93 -15.15 14 16 C 0.42 15.43 6.05 113.37 0.69 16.11 14 17 F -0.21 -8.95 16.27 44.97 0.73 -8.22 14 18 F -0.21 -8.96 16.31 44.97 0.73 -8.22 14 19 N -0.54 -29.36 5.55 -302.52 -1.68 -31.04 14 20 H 0.28 13.13 8.29 -92.71 -0.77 12.37 14 21 H 0.13 5.82 8.06 -2.91 -0.02 5.79 14 22 H 0.14 5.65 8.06 -2.91 -0.02 5.63 14 23 H 0.22 4.80 8.14 -2.39 -0.02 4.78 14 Total: -1.00 -62.14 229.71 6.03 -56.11 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.26 Total: 7.92 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 2.86 Total: 1.79 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: -1.44 Total: -66.90 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.93 Total: -15.15 kcal Atomic # 9 Polarization: -24.02 SS G_CDS: 2.24 Total: -21.78 kcal Atomic # 14 Polarization: 35.98 SS G_CDS: 2.03 Total: 38.01 kcal Total: -62.14 6.03 -56.11 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307001258.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.718 kcal (2) G-P(sol) polarization free energy of solvation -62.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds