Wall clock time and date at job start Mon Mar 30 2020 03:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 120.00055 * 2 1 4 4 H 1.48503 * 109.46979 * 274.98330 * 3 2 1 5 5 H 1.48500 * 109.47200 * 34.97722 * 3 2 1 6 6 H 1.48499 * 109.47229 * 154.98156 * 3 2 1 7 7 C 1.40039 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99932 * 186.28569 * 7 2 1 9 9 C 1.41332 * 119.99872 * 6.28682 * 7 2 1 10 10 C 1.40597 * 119.79442 * 173.67829 * 9 7 2 11 11 C 1.38290 * 119.11024 * 179.97438 * 10 9 7 12 12 C 1.38721 * 118.65704 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.24693 * 180.02562 * 12 11 10 14 14 F 1.39899 * 109.46885 * 359.97438 * 13 12 11 15 15 F 1.39897 * 109.46904 * 239.99948 * 13 12 11 16 16 F 1.39898 * 109.47126 * 119.99363 * 13 12 11 17 17 C 1.39519 * 119.50609 * 0.26926 * 12 11 10 18 18 O 1.35627 * 119.56146 * 179.70412 * 17 12 11 19 19 N 1.31825 * 120.87200 * 359.43342 * 17 12 11 20 20 H 0.96994 * 120.00171 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.44090 * 359.97438 * 10 9 7 22 22 H 1.08000 * 120.67626 * 179.97438 * 11 10 9 23 23 H 0.96696 * 113.99274 * 90.00236 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3836 2.1072 -1.3948 5 1 1.4954 2.6200 0.8026 6 1 3.5876 1.4120 0.5921 7 6 2.0076 -1.2128 0.0005 8 1 3.0827 -1.2156 0.1029 9 6 1.3072 -2.4331 -0.1329 10 6 2.0208 -3.6372 -0.2658 11 6 1.3213 -4.8231 -0.3950 12 6 -0.0653 -4.7816 -0.3893 13 6 -0.8634 -6.0524 -0.5271 14 9 0.0085 -7.1399 -0.6469 15 9 -1.6707 -5.9748 -1.6670 16 9 -1.6687 -6.2223 0.6042 17 6 -0.7154 -3.5539 -0.2602 18 8 -2.0710 -3.5113 -0.2606 19 7 -0.0296 -2.4354 -0.1326 20 1 -0.4850 0.8400 -0.0004 21 1 3.1009 -3.6359 -0.2670 22 1 1.8438 -5.7625 -0.4990 23 1 -2.4672 -3.5930 0.6177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307031929.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:26 Heat of formation + Delta-G solvation = -187.153944 kcal Electronic energy + Delta-G solvation = -16287.746352 eV Core-core repulsion = 12878.246907 eV Total energy + Delta-G solvation = -3409.499445 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.92454 -48.47474 -48.38152 -40.62371 -37.85467 -35.61878 -33.07943 -31.56518 -28.83800 -25.66813 -23.89933 -22.94433 -20.04087 -19.30856 -19.20165 -19.01116 -18.83238 -17.07561 -16.53388 -16.14576 -15.35124 -15.25640 -15.10535 -14.88412 -14.64723 -14.61323 -14.34242 -14.13189 -13.81678 -12.95256 -12.86328 -12.84463 -12.51892 -12.18884 -11.86645 -11.35515 -10.41212 -9.81816 -9.69766 -8.50175 -6.79866 0.40099 0.89523 1.41604 1.49029 1.57840 1.97707 2.16427 2.55354 3.05313 3.19759 3.37666 3.51955 3.82070 4.24880 4.64484 4.70432 4.93834 5.13791 5.36013 5.43431 5.79104 6.02413 6.42594 6.59012 6.91582 7.85348 8.22729 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.051656 B = 0.007703 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.913084 B = 3634.082558 C = 3995.788782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.016 3.984 3 Si 0.997 3.003 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.245 1.245 7 C -0.423 4.423 8 H 0.112 0.888 9 C 0.237 3.763 10 C -0.284 4.284 11 C -0.008 4.008 12 C -0.415 4.415 13 C 0.537 3.463 14 F -0.185 7.185 15 F -0.191 7.191 16 F -0.189 7.189 17 C 0.368 3.632 18 O -0.499 6.499 19 N -0.535 5.535 20 H 0.287 0.713 21 H 0.136 0.864 22 H 0.145 0.855 23 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.591 -3.430 1.199 3.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.209 4.209 3 Si 0.816 3.184 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.168 1.168 7 C -0.452 4.452 8 H 0.130 0.870 9 C 0.115 3.885 10 C -0.306 4.306 11 C -0.030 4.030 12 C -0.424 4.424 13 C 0.483 3.517 14 F -0.166 7.166 15 F -0.173 7.173 16 F -0.170 7.170 17 C 0.177 3.823 18 O -0.307 6.307 19 N -0.258 5.258 20 H 0.098 0.902 21 H 0.153 0.847 22 H 0.163 0.837 23 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 1.006 -2.481 0.702 2.768 hybrid contribution 0.094 -0.486 0.299 0.579 sum 1.101 -2.967 1.002 3.319 Atomic orbital electron populations 1.70218 1.09371 1.30275 1.25535 1.27278 0.95777 1.05396 0.92448 0.84952 0.79303 0.74704 0.79419 1.18892 1.19256 1.16809 1.20408 0.96262 0.89846 1.38649 0.87000 1.18955 0.87036 0.94018 0.88522 1.21957 1.00494 0.92477 1.15704 1.20903 0.91215 0.98904 0.92022 1.20404 0.95820 0.91483 1.34677 1.17832 0.77150 0.83692 0.73070 1.93070 1.69581 1.58087 1.95876 1.93138 1.75299 1.96542 1.52303 1.93108 1.75383 1.96137 1.52393 1.19274 0.84193 0.87781 0.91001 1.84629 1.15255 1.95800 1.35037 1.68313 1.09197 1.26446 1.21883 0.90209 0.84651 0.83697 0.73585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.37 11.49 21.84 0.25 -37.12 14 2 C 0.02 0.74 5.49 85.29 0.47 1.21 14 3 Si 1.00 34.21 29.56 68.60 2.03 36.23 14 4 H -0.26 -8.92 7.11 99.48 0.71 -8.21 14 5 H -0.27 -8.90 7.11 99.48 0.71 -8.19 14 6 H -0.25 -7.83 7.11 99.48 0.71 -7.12 14 7 C -0.42 -20.67 9.13 23.47 0.21 -20.46 14 8 H 0.11 4.86 7.85 -2.91 -0.02 4.84 14 9 C 0.24 12.27 6.54 40.20 0.26 12.54 14 10 C -0.28 -12.74 9.83 22.86 0.22 -12.52 14 11 C -0.01 -0.32 9.51 22.40 0.21 -0.11 14 12 C -0.42 -18.49 5.42 -19.44 -0.11 -18.60 14 13 C 0.54 21.15 2.99 71.24 0.21 21.37 14 14 F -0.18 -6.63 16.03 44.97 0.72 -5.91 14 15 F -0.19 -7.80 16.94 44.97 0.76 -7.04 14 16 F -0.19 -7.03 16.97 44.97 0.76 -6.26 14 17 C 0.37 18.12 7.64 85.00 0.65 18.77 14 18 O -0.50 -22.13 12.47 -89.39 -1.12 -23.24 14 19 N -0.54 -29.13 7.91 -302.42 -2.39 -31.53 14 20 H 0.29 13.12 8.29 -92.71 -0.77 12.35 14 21 H 0.14 5.26 8.06 -2.91 -0.02 5.24 14 22 H 0.15 5.06 7.24 -2.91 -0.02 5.04 14 23 H 0.41 14.14 9.06 -74.06 -0.67 13.47 14 Total: -1.00 -59.02 229.78 3.77 -55.25 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.61 Total: 17.42 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 2.14 Total: 2.20 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -2.14 Total: -68.64 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -1.12 Total: -23.24 kcal Atomic # 9 Polarization: -21.46 SS G_CDS: 2.25 Total: -19.22 kcal Atomic # 14 Polarization: 34.21 SS G_CDS: 2.03 Total: 36.23 kcal Total: -59.02 3.77 -55.25 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307031929.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.909 kcal (2) G-P(sol) polarization free energy of solvation -59.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds