Wall clock time and date at job start Mon Mar 30 2020 03:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30787 * 1 3 3 Si 1.86797 * 120.00075 * 2 1 4 4 H 1.48504 * 109.46795 * 274.98487 * 3 2 1 5 5 H 1.48499 * 109.47163 * 34.98091 * 3 2 1 6 6 H 1.48494 * 109.47194 * 154.98481 * 3 2 1 7 7 C 1.40030 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99676 * 186.27686 * 7 2 1 9 9 C 1.40969 * 120.00329 * 6.28283 * 7 2 1 10 10 N 1.33702 * 119.85752 * 353.59449 * 9 7 2 11 11 C 1.31305 * 121.59048 * 180.02562 * 10 9 7 12 12 C 1.39288 * 121.13467 * 359.97438 * 11 10 9 13 13 F 1.35095 * 120.20527 * 180.02562 * 12 11 10 14 14 C 1.38876 * 119.58889 * 0.02562 * 12 11 10 15 15 C 1.38823 * 118.52527 * 359.97438 * 14 12 11 16 16 O 1.35594 * 120.56047 * 180.02562 * 15 14 12 17 17 C 1.42907 * 116.99826 * 0.02562 * 16 15 14 18 18 F 1.39902 * 109.46960 * 299.99480 * 17 16 15 19 19 F 1.39896 * 109.47187 * 59.99691 * 17 16 15 20 20 H 0.97003 * 119.99884 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.43058 * 180.28518 * 11 10 9 22 22 H 1.08007 * 120.73423 * 179.97438 * 14 12 11 23 23 H 1.09002 * 109.47077 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.3840 2.1072 -1.3948 5 1 1.4959 2.6200 0.8027 6 1 3.5881 1.4120 0.5920 7 6 2.0080 -1.2127 0.0005 8 1 3.0832 -1.2155 0.1028 9 6 1.3095 -2.4300 -0.1325 10 7 -0.0275 -2.4339 -0.1301 11 6 -0.7123 -3.5477 -0.2512 12 6 -0.0707 -4.7763 -0.3884 13 9 -0.7938 -5.9107 -0.5122 14 6 1.3171 -4.8280 -0.3971 15 6 2.0255 -3.6411 -0.2679 16 8 3.3815 -3.6436 -0.2717 17 6 4.0275 -4.9104 -0.4136 18 9 3.6530 -5.7460 0.6441 19 9 3.6471 -5.4945 -1.6266 20 1 -0.4850 0.8401 -0.0004 21 1 -1.7917 -3.5099 -0.2494 22 1 1.8337 -5.7706 -0.5020 23 1 5.1084 -4.7705 -0.4004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307064027.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:46 Heat of formation + Delta-G solvation = -179.745437 kcal Electronic energy + Delta-G solvation = -16276.860626 eV Core-core repulsion = 12867.682438 eV Total energy + Delta-G solvation = -3409.178188 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.18315 -49.39207 -48.20306 -40.69448 -38.46994 -35.60156 -32.22556 -31.63968 -27.65241 -26.90632 -23.98603 -23.36081 -19.88245 -19.72457 -19.28231 -18.76457 -17.44604 -17.33821 -16.84231 -16.35133 -16.29411 -15.52697 -15.30240 -14.78899 -14.72351 -14.55530 -14.41530 -13.79331 -13.41988 -13.36598 -12.87940 -12.76511 -12.69843 -12.45024 -11.81058 -11.22895 -10.17762 -9.96655 -9.43250 -8.49192 -6.55302 0.53011 0.66926 1.44538 1.52924 1.60345 1.96243 2.21798 2.65436 2.66250 3.54991 3.57972 3.77083 3.84799 3.92931 4.09298 4.27883 4.63589 5.08801 5.18238 5.24077 5.76872 5.91131 6.14617 6.54389 6.77275 7.80797 8.30378 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.025638 B = 0.010451 C = 0.007790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.852689 B = 2678.612194 C = 3593.640304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.020 3.980 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.250 1.250 7 C -0.423 4.423 8 H 0.103 0.897 9 C 0.213 3.787 10 N -0.476 5.476 11 C 0.089 3.911 12 C -0.107 4.107 13 F -0.160 7.160 14 C -0.155 4.155 15 C -0.039 4.039 16 O -0.316 6.316 17 C 0.398 3.602 18 F -0.217 7.217 19 F -0.217 7.217 20 H 0.288 0.712 21 H 0.156 0.844 22 H 0.133 0.867 23 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.376 -2.085 -0.445 7.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.204 4.204 3 Si 0.815 3.185 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.173 1.173 7 C -0.454 4.454 8 H 0.121 0.879 9 C 0.088 3.912 10 N -0.190 5.190 11 C -0.076 4.076 12 C -0.132 4.132 13 F -0.139 7.139 14 C -0.179 4.179 15 C -0.087 4.087 16 O -0.233 6.233 17 C 0.308 3.692 18 F -0.199 7.199 19 F -0.199 7.199 20 H 0.099 0.901 21 H 0.173 0.827 22 H 0.151 0.849 23 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 6.863 -1.076 -0.335 6.954 hybrid contribution 0.092 -1.119 -0.195 1.140 sum 6.955 -2.195 -0.529 7.312 Atomic orbital electron populations 1.70188 1.09121 1.30217 1.26804 1.27144 0.95806 1.04919 0.92518 0.84972 0.79178 0.74846 0.79477 1.18699 1.19023 1.17348 1.20008 0.95913 0.89690 1.39749 0.87929 1.18701 0.88091 0.91132 0.93263 1.68965 1.06114 1.25076 1.18845 1.23102 1.00883 0.86963 0.96650 1.18239 0.89300 0.83205 1.22458 1.91290 1.77671 1.49613 1.95350 1.21367 0.93838 0.97563 1.05167 1.19750 0.81748 0.94646 1.12545 1.86446 1.17752 1.30499 1.88572 1.24345 0.99357 0.74684 0.70825 1.93032 1.93952 1.73910 1.59018 1.93031 1.93820 1.85348 1.47702 0.90146 0.82720 0.84888 0.74868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.78 11.49 21.84 0.25 -37.53 14 2 C 0.02 0.94 5.49 85.28 0.47 1.41 14 3 Si 1.00 35.27 29.56 68.60 2.03 37.30 14 4 H -0.26 -9.02 7.11 99.48 0.71 -8.32 14 5 H -0.27 -8.97 7.11 99.48 0.71 -8.27 14 6 H -0.25 -8.44 7.11 99.48 0.71 -7.73 14 7 C -0.42 -21.81 8.93 23.37 0.21 -21.61 14 8 H 0.10 4.94 7.34 -2.91 -0.02 4.91 14 9 C 0.21 11.57 6.56 40.29 0.26 11.83 14 10 N -0.48 -26.17 7.88 -188.48 -1.48 -27.65 14 11 C 0.09 4.45 11.17 85.02 0.95 5.40 14 12 C -0.11 -5.22 7.36 22.68 0.17 -5.05 14 13 F -0.16 -7.28 17.28 44.97 0.78 -6.50 14 14 C -0.15 -7.36 8.33 22.56 0.19 -7.17 14 15 C -0.04 -1.93 6.52 23.18 0.15 -1.78 14 16 O -0.32 -13.04 9.56 -89.04 -0.85 -13.89 14 17 C 0.40 11.97 5.98 113.37 0.68 12.65 14 18 F -0.22 -7.24 15.61 44.97 0.70 -6.54 14 19 F -0.22 -7.25 15.62 44.97 0.70 -6.54 14 20 H 0.29 13.02 8.30 -92.71 -0.77 12.25 14 21 H 0.16 6.78 8.06 -2.91 -0.02 6.76 14 22 H 0.13 5.84 5.25 -2.91 -0.02 5.82 14 23 H 0.24 3.79 8.14 -2.39 -0.02 3.77 14 Total: -1.00 -62.94 225.73 6.47 -56.47 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.27 Total: 9.21 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 3.07 Total: -4.32 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -1.23 Total: -65.18 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.85 Total: -13.89 kcal Atomic # 9 Polarization: -21.77 SS G_CDS: 2.18 Total: -19.59 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Total: -62.94 6.47 -56.47 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307064027.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.275 kcal (2) G-P(sol) polarization free energy of solvation -62.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds