Wall clock time and date at job start Mon Mar 30 2020 03:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86794 * 120.00274 * 2 1 4 4 H 1.48498 * 109.47093 * 274.78882 * 3 2 1 5 5 H 1.48506 * 109.47197 * 34.78772 * 3 2 1 6 6 H 1.48497 * 109.47380 * 154.79115 * 3 2 1 7 7 C 1.39939 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00237 * 163.13274 * 7 2 1 9 9 C 1.41209 * 119.99923 * 343.13239 * 7 2 1 10 10 C 1.40670 * 120.71560 * 335.27542 * 9 7 2 11 11 N 1.31465 * 120.44953 * 180.02562 * 10 9 7 12 12 C 1.32241 * 122.16000 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.29200 * 180.02562 * 12 11 10 14 14 F 1.39903 * 109.47213 * 270.00721 * 13 12 11 15 15 F 1.39903 * 109.47065 * 30.00475 * 13 12 11 16 16 F 1.39903 * 109.46987 * 150.00407 * 13 12 11 17 17 C 1.38148 * 121.41710 * 0.02562 * 12 11 10 18 18 C 1.38900 * 119.35318 * 359.97438 * 17 12 11 19 19 O 1.35519 * 120.97560 * 180.02562 * 18 17 12 20 20 H 0.97004 * 119.99805 * 0.02562 * 1 2 3 21 21 H 1.08003 * 119.77303 * 359.75086 * 10 9 7 22 22 H 1.07998 * 120.32324 * 179.97438 * 17 12 11 23 23 H 0.96703 * 113.99952 * 269.97654 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.3890 2.1047 -1.3952 5 1 1.4944 2.6213 0.7988 6 1 3.5872 1.4130 0.5963 7 6 2.0083 -1.2119 -0.0005 8 1 3.0534 -1.2320 -0.2719 9 6 1.3478 -2.4087 0.3538 10 6 0.2079 -2.3834 1.1778 11 7 -0.4027 -3.5007 1.5048 12 6 0.0167 -4.6817 1.0825 13 6 -0.7330 -5.9216 1.4966 14 9 -0.1966 -6.4137 2.6914 15 9 -2.0834 -5.6087 1.6858 16 9 -0.6150 -6.8935 0.4972 17 6 1.1272 -4.8031 0.2698 18 6 1.8189 -3.6610 -0.1131 19 8 2.9121 -3.7420 -0.9099 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1655 -1.4399 1.5479 22 1 1.4544 -5.7765 -0.0645 23 1 3.7445 -3.8376 -0.4270 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307112150.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:09 Heat of formation + Delta-G solvation = -179.144233 kcal Electronic energy + Delta-G solvation = -16093.373798 eV Core-core repulsion = 12684.221680 eV Total energy + Delta-G solvation = -3409.152118 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.34023 -46.91011 -46.78990 -38.92490 -36.13233 -34.45387 -30.69046 -30.04452 -27.06586 -24.21257 -22.22868 -21.18981 -18.17002 -17.92178 -17.73362 -17.53190 -16.25646 -15.57938 -14.95026 -14.22839 -14.03555 -13.72873 -13.66721 -13.32280 -13.09235 -13.02079 -12.91003 -12.42561 -12.22435 -11.70976 -11.57179 -11.36296 -11.12326 -10.68691 -9.73987 -9.49780 -8.53590 -8.28064 -8.02431 -7.27987 -4.86594 2.12774 2.45532 2.84621 2.87153 2.92508 3.50267 3.60036 4.14735 4.62778 4.86298 4.99286 5.32386 5.49150 5.84905 6.35040 6.43817 6.67862 6.85553 6.98450 7.13342 7.63071 7.90786 8.12327 8.26780 8.69257 9.24710 9.65771 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.042777 B = 0.007766 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.396018 B = 3604.529049 C = 4024.896207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.068 3.932 3 Si 0.924 3.076 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.406 4.406 8 H 0.093 0.907 9 C 0.055 3.945 10 C 0.062 3.938 11 N -0.440 5.440 12 C -0.120 4.120 13 C 0.532 3.468 14 F -0.191 7.191 15 F -0.180 7.180 16 F -0.190 7.190 17 C -0.105 4.105 18 C 0.001 3.999 19 O -0.483 6.483 20 H 0.294 0.706 21 H 0.162 0.838 22 H 0.115 0.885 23 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 -1.929 1.500 3.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.155 4.155 3 Si 0.747 3.253 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.435 4.435 8 H 0.111 0.889 9 C 0.049 3.951 10 C -0.108 4.108 11 N -0.148 5.148 12 C -0.251 4.251 13 C 0.477 3.523 14 F -0.172 7.172 15 F -0.161 7.161 16 F -0.171 7.171 17 C -0.126 4.126 18 C -0.050 4.050 19 O -0.290 6.290 20 H 0.105 0.895 21 H 0.179 0.821 22 H 0.133 0.867 23 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.220 -1.830 1.551 2.691 hybrid contribution 1.234 0.373 -0.231 1.310 sum 2.455 -1.456 1.321 3.145 Atomic orbital electron populations 1.69767 1.07940 1.30991 1.29882 1.26212 0.95007 1.02422 0.91824 0.86008 0.80591 0.79066 0.79637 1.18966 1.19403 1.17925 1.19675 0.98337 0.90354 1.35087 0.88944 1.19034 0.93531 0.92785 0.89775 1.22888 0.95120 0.94253 0.98511 1.66589 1.29575 0.97614 1.21013 1.19488 1.01690 0.91455 1.12483 1.18034 0.77146 0.83285 0.73822 1.93136 1.86236 1.89394 1.48462 1.93130 1.34901 1.92985 1.95112 1.93102 1.95933 1.66175 1.61912 1.21377 0.96163 0.98390 0.96686 1.18532 0.93634 0.91663 1.01163 1.84772 1.15034 1.95488 1.33670 0.89454 0.82089 0.86708 0.78576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.66 10.95 55.55 0.61 -17.05 14 2 C 0.07 1.51 5.17 -17.33 -0.09 1.42 14 3 Si 0.92 16.33 29.59 -169.99 -5.03 11.30 14 4 H -0.26 -4.68 7.11 56.52 0.40 -4.28 14 5 H -0.27 -4.64 7.11 56.52 0.40 -4.24 14 6 H -0.26 -4.46 7.11 56.52 0.40 -4.05 14 7 C -0.41 -9.63 8.78 -37.82 -0.33 -9.96 14 8 H 0.09 2.07 7.71 -52.49 -0.40 1.66 14 9 C 0.05 1.37 5.60 -106.52 -0.60 0.77 14 10 C 0.06 1.57 9.89 -16.79 -0.17 1.40 14 11 N -0.44 -11.13 9.91 -8.88 -0.09 -11.21 14 12 C -0.12 -2.83 6.30 -82.45 -0.52 -3.35 14 13 C 0.53 11.28 3.42 36.00 0.12 11.41 14 14 F -0.19 -3.86 17.30 2.25 0.04 -3.82 14 15 F -0.18 -3.88 17.02 2.25 0.04 -3.84 14 16 F -0.19 -3.74 16.41 2.25 0.04 -3.70 14 17 C -0.10 -2.38 9.36 -39.37 -0.37 -2.75 14 18 C 0.00 0.01 6.80 -38.01 -0.26 -0.25 14 19 O -0.48 -10.08 12.93 -18.25 -0.24 -10.32 14 20 H 0.29 6.05 8.30 -40.82 -0.34 5.71 14 21 H 0.16 4.04 6.17 -52.48 -0.32 3.72 14 22 H 0.11 2.32 7.57 -52.49 -0.40 1.93 14 23 H 0.36 5.68 9.06 45.56 0.41 6.10 14 LS Contribution 229.57 15.07 3.46 3.46 Total: -1.00 -26.73 229.57 -3.23 -29.95 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 0.15 Total: 6.55 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.21 Total: -1.31 kcal Atomic # 7 Polarization: -28.79 SS G_CDS: 0.52 Total: -28.27 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.24 Total: -10.32 kcal Atomic # 9 Polarization: -11.48 SS G_CDS: 0.11 Total: -11.36 kcal Atomic # 14 Polarization: 16.33 SS G_CDS: -5.03 Total: 11.30 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -26.73 -3.23 -29.95 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307112150.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.192 kcal (2) G-P(sol) polarization free energy of solvation -26.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds