Wall clock time and date at job start Mon Mar 30 2020 03:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86794 * 120.00274 * 2 1 4 4 H 1.48498 * 109.47093 * 274.78882 * 3 2 1 5 5 H 1.48506 * 109.47197 * 34.78772 * 3 2 1 6 6 H 1.48497 * 109.47380 * 154.79115 * 3 2 1 7 7 C 1.39939 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00237 * 163.13274 * 7 2 1 9 9 C 1.41209 * 119.99923 * 343.13239 * 7 2 1 10 10 C 1.40670 * 120.71560 * 335.27542 * 9 7 2 11 11 N 1.31465 * 120.44953 * 180.02562 * 10 9 7 12 12 C 1.32241 * 122.16000 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.29200 * 180.02562 * 12 11 10 14 14 F 1.39903 * 109.47213 * 270.00721 * 13 12 11 15 15 F 1.39903 * 109.47065 * 30.00475 * 13 12 11 16 16 F 1.39903 * 109.46987 * 150.00407 * 13 12 11 17 17 C 1.38148 * 121.41710 * 0.02562 * 12 11 10 18 18 C 1.38900 * 119.35318 * 359.97438 * 17 12 11 19 19 O 1.35519 * 120.97560 * 180.02562 * 18 17 12 20 20 H 0.97004 * 119.99805 * 0.02562 * 1 2 3 21 21 H 1.08003 * 119.77303 * 359.75086 * 10 9 7 22 22 H 1.07998 * 120.32324 * 179.97438 * 17 12 11 23 23 H 0.96703 * 113.99952 * 269.97654 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.3890 2.1047 -1.3952 5 1 1.4944 2.6213 0.7988 6 1 3.5872 1.4130 0.5963 7 6 2.0083 -1.2119 -0.0005 8 1 3.0534 -1.2320 -0.2719 9 6 1.3478 -2.4087 0.3538 10 6 0.2079 -2.3834 1.1778 11 7 -0.4027 -3.5007 1.5048 12 6 0.0167 -4.6817 1.0825 13 6 -0.7330 -5.9216 1.4966 14 9 -0.1966 -6.4137 2.6914 15 9 -2.0834 -5.6087 1.6858 16 9 -0.6150 -6.8935 0.4972 17 6 1.1272 -4.8031 0.2698 18 6 1.8189 -3.6610 -0.1131 19 8 2.9121 -3.7420 -0.9099 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1655 -1.4399 1.5479 22 1 1.4544 -5.7765 -0.0645 23 1 3.7445 -3.8376 -0.4270 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307112150.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:09 Heat of formation + Delta-G solvation = -196.923892 kcal Electronic energy + Delta-G solvation = -16094.144782 eV Core-core repulsion = 12684.221680 eV Total energy + Delta-G solvation = -3409.923102 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -51.00574 -48.54686 -48.47431 -40.71571 -37.85365 -36.19458 -32.47942 -31.84695 -28.82558 -25.96183 -24.05246 -22.95098 -19.88961 -19.67276 -19.39607 -19.23121 -17.96567 -17.28563 -16.68572 -15.87119 -15.76039 -15.38843 -15.32429 -14.97311 -14.75665 -14.68797 -14.60177 -14.14097 -14.02804 -13.35926 -13.15715 -13.11385 -12.73926 -12.08530 -11.38906 -11.19545 -10.38482 -10.09914 -9.86031 -8.96314 -6.67244 0.34571 0.65232 1.39829 1.47559 1.58098 1.79997 2.12485 2.43282 2.89472 3.16608 3.23493 3.66086 3.74905 4.10525 4.54168 4.66549 4.95501 5.06548 5.17761 5.41276 5.80471 6.11847 6.35764 6.49135 7.11389 7.38888 8.00765 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.042777 B = 0.007766 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.396018 B = 3604.529049 C = 4024.896207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.031 3.969 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.250 1.250 7 C -0.423 4.423 8 H 0.102 0.898 9 C 0.028 3.972 10 C 0.040 3.960 11 N -0.457 5.457 12 C -0.139 4.139 13 C 0.541 3.459 14 F -0.184 7.184 15 F -0.183 7.183 16 F -0.178 7.178 17 C -0.107 4.107 18 C -0.003 4.003 19 O -0.487 6.487 20 H 0.305 0.695 21 H 0.154 0.846 22 H 0.139 0.861 23 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.692 -1.432 1.155 4.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.189 4.189 3 Si 0.818 3.182 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.173 1.173 7 C -0.451 4.451 8 H 0.120 0.880 9 C 0.022 3.978 10 C -0.129 4.129 11 N -0.166 5.166 12 C -0.271 4.271 13 C 0.486 3.514 14 F -0.165 7.165 15 F -0.165 7.165 16 F -0.160 7.160 17 C -0.128 4.128 18 C -0.054 4.054 19 O -0.296 6.296 20 H 0.116 0.884 21 H 0.171 0.829 22 H 0.157 0.843 23 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.304 -1.350 1.213 2.933 hybrid contribution 0.922 0.201 -0.167 0.958 sum 3.225 -1.150 1.046 3.581 Atomic orbital electron populations 1.69798 1.09542 1.32646 1.29524 1.27154 0.95625 1.05556 0.90602 0.84899 0.79247 0.74275 0.79737 1.18543 1.18580 1.17283 1.20027 0.98878 0.90931 1.35223 0.88009 1.19330 0.93898 0.94109 0.90451 1.22802 0.96194 0.94144 0.99751 1.66546 1.30143 0.98257 1.21622 1.19877 1.02491 0.91724 1.13040 1.17705 0.76738 0.82814 0.74168 1.93146 1.86128 1.89197 1.48078 1.93122 1.35104 1.93073 1.95156 1.93121 1.95859 1.65525 1.61492 1.21582 0.95675 0.99293 0.96236 1.18638 0.94466 0.91518 1.00769 1.84679 1.15665 1.95387 1.33916 0.88384 0.82926 0.84293 0.75689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.60 10.95 21.83 0.24 -36.36 14 2 C 0.03 1.34 5.17 85.25 0.44 1.78 14 3 Si 1.00 32.11 29.59 68.60 2.03 34.14 14 4 H -0.26 -8.20 7.11 99.48 0.71 -7.49 14 5 H -0.26 -8.02 7.11 99.48 0.71 -7.31 14 6 H -0.25 -7.72 7.11 99.48 0.71 -7.01 14 7 C -0.42 -19.82 8.78 23.41 0.21 -19.62 14 8 H 0.10 4.43 7.71 -2.91 -0.02 4.40 14 9 C 0.03 1.41 5.60 -21.10 -0.12 1.29 14 10 C 0.04 2.07 9.89 85.34 0.84 2.91 14 11 N -0.46 -23.37 9.91 -182.00 -1.80 -25.18 14 12 C -0.14 -6.53 6.30 42.47 0.27 -6.26 14 13 C 0.54 22.37 3.42 71.23 0.24 22.62 14 14 F -0.18 -7.22 17.30 44.97 0.78 -6.44 14 15 F -0.18 -7.78 17.02 44.97 0.77 -7.01 14 16 F -0.18 -6.73 16.41 44.97 0.74 -5.99 14 17 C -0.11 -4.74 9.36 22.41 0.21 -4.53 14 18 C 0.00 -0.14 6.80 23.29 0.16 0.01 14 19 O -0.49 -19.48 12.93 -88.22 -1.14 -20.62 14 20 H 0.30 12.41 8.30 -92.71 -0.77 11.64 14 21 H 0.15 7.91 6.17 -2.91 -0.02 7.90 14 22 H 0.14 5.34 7.57 -2.91 -0.02 5.32 14 23 H 0.39 11.31 9.06 -74.06 -0.67 10.64 14 Total: -1.00 -55.66 229.57 4.47 -51.19 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.62 Total: 18.07 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 2.25 Total: -1.80 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -1.57 Total: -61.54 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -1.14 Total: -20.62 kcal Atomic # 9 Polarization: -21.72 SS G_CDS: 2.28 Total: -19.44 kcal Atomic # 14 Polarization: 32.11 SS G_CDS: 2.03 Total: 34.14 kcal Total: -55.66 4.47 -51.19 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307112150.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.737 kcal (2) G-P(sol) polarization free energy of solvation -55.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds