Wall clock time and date at job start Mon Mar 30 2020 03:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86802 * 119.99994 * 2 1 4 4 H 1.48508 * 109.46875 * 85.64683 * 3 2 1 5 5 H 1.48500 * 109.46946 * 205.64027 * 3 2 1 6 6 H 1.48492 * 109.47530 * 325.64754 * 3 2 1 7 7 C 1.39935 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00285 * 159.56637 * 7 2 1 9 9 C 1.41081 * 119.99326 * 339.56833 * 7 2 1 10 10 C 1.41301 * 120.72053 * 324.72847 * 9 7 2 11 11 F 1.35092 * 120.90058 * 0.02562 * 10 9 7 12 12 C 1.38388 * 118.19774 * 179.97438 * 10 9 7 13 13 C 1.38441 * 119.53889 * 0.02562 * 12 10 9 14 14 N 1.32087 * 121.45956 * 0.02562 * 13 12 10 15 15 C 1.32047 * 121.96903 * 359.66565 * 14 13 12 16 16 O 1.35415 * 119.86686 * 180.31656 * 15 14 13 17 17 C 1.42902 * 116.99653 * 0.27708 * 16 15 14 18 18 F 1.39902 * 109.47391 * 299.99479 * 17 16 15 19 19 F 1.39898 * 109.47209 * 60.00133 * 17 16 15 20 20 H 0.97005 * 120.00182 * 359.97438 * 1 2 3 21 21 H 1.07993 * 120.23181 * 180.02562 * 12 10 9 22 22 H 1.08005 * 119.26724 * 179.97438 * 13 12 10 23 23 H 1.09011 * 109.46841 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3983 2.0995 1.3961 5 1 3.5834 1.4153 -0.6058 6 1 1.4894 2.6244 -0.7900 7 6 2.0085 -1.2119 -0.0005 8 1 3.0375 -1.2412 -0.3271 9 6 1.3696 -2.3953 0.4255 10 6 0.4229 -2.3673 1.4741 11 9 0.1069 -1.2086 2.0927 12 6 -0.1726 -3.5587 1.8496 13 6 0.1719 -4.7296 1.1961 14 7 1.0599 -4.7377 0.2183 15 6 1.6591 -3.6345 -0.1911 16 8 2.5584 -3.6910 -1.2020 17 6 2.8039 -4.9742 -1.7809 18 9 3.2880 -5.8443 -0.7982 19 9 1.6125 -5.4833 -2.3088 20 1 -0.4851 0.8401 0.0004 21 1 -0.9009 -3.5751 2.6468 22 1 -0.2953 -5.6570 1.4930 23 1 3.5420 -4.8782 -2.5774 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307118523.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:30 Heat of formation + Delta-G solvation = -182.815912 kcal Electronic energy + Delta-G solvation = -16469.929449 eV Core-core repulsion = 13060.618115 eV Total energy + Delta-G solvation = -3409.311334 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.82028 -49.21193 -47.96627 -40.75950 -38.22072 -35.88921 -32.50649 -31.58352 -27.70978 -26.77597 -23.76131 -23.38834 -19.97037 -19.48381 -19.10382 -18.60637 -17.69095 -17.09224 -16.76549 -16.13486 -15.88397 -15.62924 -15.27785 -14.73776 -14.65575 -14.50850 -14.31640 -13.61561 -13.48538 -13.31583 -13.01435 -12.95341 -12.84521 -12.22394 -11.74751 -11.27331 -10.40946 -9.87705 -9.46146 -8.81020 -6.50595 0.50908 0.64958 1.37401 1.46329 1.52585 1.93889 2.17889 2.62308 2.81700 3.28707 3.65355 3.88061 3.91586 4.00652 4.33832 4.50989 4.90034 5.11061 5.15248 5.37431 5.82236 6.01575 6.30341 6.59726 6.69104 7.27993 8.20347 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.029463 B = 0.010682 C = 0.008523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.110703 B = 2620.512586 C = 3284.474036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.034 3.966 3 Si 0.987 3.013 4 H -0.265 1.265 5 H -0.251 1.251 6 H -0.265 1.265 7 C -0.473 4.473 8 H 0.090 0.910 9 C 0.012 3.988 10 C 0.046 3.954 11 F -0.138 7.138 12 C -0.190 4.190 13 C 0.026 3.974 14 N -0.520 5.520 15 C 0.200 3.800 16 O -0.321 6.321 17 C 0.413 3.587 18 F -0.213 7.213 19 F -0.215 7.215 20 H 0.294 0.706 21 H 0.150 0.850 22 H 0.178 0.822 23 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.484 -3.194 -1.575 4.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.175 1.175 6 H -0.189 1.189 7 C -0.501 4.501 8 H 0.108 0.892 9 C 0.007 3.993 10 C 0.019 3.981 11 F -0.116 7.116 12 C -0.211 4.211 13 C -0.129 4.129 14 N -0.242 5.242 15 C 0.019 3.981 16 O -0.233 6.233 17 C 0.323 3.677 18 F -0.195 7.195 19 F -0.197 7.197 20 H 0.104 0.896 21 H 0.168 0.832 22 H 0.195 0.805 23 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 3.567 -3.642 -2.066 5.500 hybrid contribution -0.361 1.280 0.582 1.452 sum 3.206 -2.362 -1.485 4.249 Atomic orbital electron populations 1.69814 1.09371 1.31597 1.32519 1.26774 0.95416 1.04745 0.91392 0.85094 0.79385 0.75406 0.79404 1.18942 1.17466 1.18913 1.19492 0.99668 0.91580 1.39409 0.89182 1.17836 0.95489 0.92906 0.93086 1.17962 1.03055 0.81645 0.95463 1.91324 1.91631 1.48130 1.80553 1.21871 1.03222 0.91911 1.04068 1.21931 0.98122 0.97853 0.94965 1.66831 1.11374 1.29064 1.16954 1.19652 0.96039 0.90355 0.92058 1.86601 1.57599 1.31802 1.47347 1.24025 0.83447 0.74235 0.85956 1.93019 1.87749 1.71711 1.67019 1.93019 1.52538 1.87828 1.86289 0.89563 0.83234 0.80492 0.75608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.69 11.07 21.83 0.24 -42.45 14 2 C 0.03 1.73 4.56 85.25 0.39 2.12 14 3 Si 0.99 38.12 29.61 68.60 2.03 40.16 14 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 14 5 H -0.25 -9.26 7.11 99.48 0.71 -8.56 14 6 H -0.26 -9.62 7.11 99.48 0.71 -8.92 14 7 C -0.47 -25.40 8.54 23.38 0.20 -25.20 14 8 H 0.09 4.68 7.88 -2.91 -0.02 4.66 14 9 C 0.01 0.68 5.44 -21.05 -0.11 0.57 14 10 C 0.05 2.38 6.76 23.06 0.16 2.54 14 11 F -0.14 -7.33 14.34 44.97 0.64 -6.68 14 12 C -0.19 -8.37 10.08 22.35 0.23 -8.14 14 13 C 0.03 1.09 11.16 84.70 0.95 2.04 14 14 N -0.52 -24.83 8.07 -307.09 -2.48 -27.31 14 15 C 0.20 10.20 7.23 85.44 0.62 10.81 14 16 O -0.32 -14.45 9.84 -87.10 -0.86 -15.31 14 17 C 0.41 14.14 6.06 113.37 0.69 14.82 14 18 F -0.21 -7.90 16.57 44.97 0.74 -7.16 14 19 F -0.21 -8.22 16.58 44.97 0.75 -7.47 14 20 H 0.29 14.03 8.30 -92.70 -0.77 13.26 14 21 H 0.15 5.46 8.06 -2.91 -0.02 5.44 14 22 H 0.18 5.99 8.06 -2.91 -0.02 5.96 14 23 H 0.23 4.57 8.14 -2.38 -0.02 4.55 14 Total: -1.00 -65.07 227.64 5.44 -59.63 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 1.26 Total: 7.04 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 3.10 Total: -0.45 kcal Atomic # 7 Polarization: -67.52 SS G_CDS: -2.24 Total: -69.76 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.86 Total: -15.31 kcal Atomic # 9 Polarization: -23.45 SS G_CDS: 2.14 Total: -21.31 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.16 kcal Total: -65.07 5.44 -59.63 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307118523.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.185 kcal (2) G-P(sol) polarization free energy of solvation -65.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds