Wall clock time and date at job start Mon Mar 30 2020 03:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86794 * 120.00513 * 2 1 4 4 H 1.48506 * 109.47402 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47356 * 300.00158 * 3 2 1 6 6 H 1.48506 * 109.46825 * 60.00143 * 3 2 1 7 7 C 1.40225 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99795 * 179.97438 * 7 2 1 9 9 C 1.39944 * 119.99752 * 0.27863 * 7 2 1 10 10 N 1.31491 * 125.28388 * 179.43655 * 9 7 2 11 11 C 1.31323 * 115.82466 * 179.81548 * 10 9 7 12 12 C 1.48103 * 122.48108 * 180.19691 * 11 10 9 13 13 C 1.39893 * 120.56650 * 0.30664 * 12 11 10 14 14 C 1.38270 * 118.28062 * 180.02562 * 13 12 11 15 15 N 1.32477 * 119.20412 * 359.97438 * 14 13 12 16 16 C 1.31827 * 121.07769 * 359.97438 * 15 14 13 17 17 N 1.31651 * 121.89586 * 359.71948 * 16 15 14 18 18 C 1.37214 * 115.03649 * 0.48052 * 11 10 9 19 19 S 1.71009 * 109.07326 * 359.74424 * 18 11 10 20 20 H 0.97005 * 119.99603 * 359.97438 * 1 2 3 21 21 H 1.07996 * 120.85776 * 359.97410 * 13 12 11 22 22 H 1.08000 * 120.39907 * 180.02562 * 14 13 12 23 23 H 1.08006 * 119.04868 * 180.02562 * 16 15 14 24 24 H 1.08001 * 125.46281 * 179.74392 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2411 1.6176 0.0000 4 1 3.7011 1.3462 0.0006 5 1 1.8824 2.3964 -1.2125 6 1 1.8823 2.3963 1.2126 7 6 2.0080 -1.2144 0.0005 8 1 3.0880 -1.2144 0.0001 9 6 1.3082 -2.4263 -0.0048 10 7 1.8579 -3.6208 -0.0154 11 6 1.0232 -4.6346 -0.0150 12 6 1.4823 -6.0427 -0.0219 13 6 2.8480 -6.3457 -0.0227 14 6 3.2238 -7.6764 -0.0297 15 7 2.2866 -8.6127 -0.0349 16 6 1.0072 -8.2949 -0.0329 17 7 0.6015 -7.0426 -0.0203 18 6 -0.3056 -4.2928 -0.0139 19 16 -0.4442 -2.5883 -0.0062 20 1 -0.4850 0.8401 0.0004 21 1 3.5896 -5.5607 -0.0188 22 1 4.2688 -7.9491 -0.0302 23 1 0.2706 -9.0849 -0.0369 24 1 -1.1316 -4.9886 -0.0174 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307122631.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:23 Heat of formation + Delta-G solvation = 46.648569 kcal Electronic energy + Delta-G solvation = -12973.234758 eV Core-core repulsion = 10590.776113 eV Total energy + Delta-G solvation = -2382.458645 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.83202 -39.38481 -36.09552 -34.66105 -33.10141 -30.96728 -28.39651 -26.32253 -25.06189 -23.70499 -20.78763 -19.75125 -18.52381 -17.73106 -17.09362 -16.82440 -16.24582 -15.86790 -15.33435 -14.62185 -14.52776 -14.45512 -14.14191 -13.55742 -13.01676 -12.47761 -11.98325 -11.90151 -11.86537 -11.65780 -11.35048 -10.73300 -10.23232 -9.96303 -9.91085 -9.10721 -8.92893 -6.76030 -0.36266 0.08510 0.69986 1.41204 1.42168 1.51260 1.62214 1.87904 2.17639 2.19411 2.87695 2.95549 3.24394 3.29002 3.67883 4.02942 4.20499 4.66444 4.72917 4.85885 4.95854 5.08659 5.43294 5.50390 5.90467 6.03021 6.35653 6.38067 7.11637 7.62176 7.99721 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.053576 B = 0.006576 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.495224 B = 4256.622090 C = 4769.269144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.020 3.980 3 Si 1.021 2.979 4 H -0.253 1.253 5 H -0.258 1.258 6 H -0.258 1.258 7 C -0.393 4.393 8 H 0.108 0.892 9 C 0.170 3.830 10 N -0.608 5.608 11 C 0.105 3.895 12 C 0.233 3.767 13 C -0.209 4.209 14 C 0.155 3.845 15 N -0.539 5.539 16 C 0.287 3.713 17 N -0.540 5.540 18 C -0.418 4.418 19 S 0.125 5.875 20 H 0.314 0.686 21 H 0.150 0.850 22 H 0.210 0.790 23 H 0.228 0.772 24 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.211 -2.849 -0.027 4.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.200 4.200 3 Si 0.838 3.162 4 H -0.176 1.176 5 H -0.182 1.182 6 H -0.182 1.182 7 C -0.436 4.436 8 H 0.126 0.874 9 C -0.083 4.083 10 N -0.332 5.332 11 C -0.033 4.033 12 C 0.088 3.912 13 C -0.232 4.232 14 C -0.010 4.010 15 N -0.254 5.254 16 C -0.001 4.001 17 N -0.256 5.256 18 C -0.565 4.565 19 S 0.385 5.615 20 H 0.127 0.873 21 H 0.168 0.832 22 H 0.227 0.773 23 H 0.244 0.756 24 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.973 -2.779 -0.027 3.408 hybrid contribution 0.708 0.204 -0.001 0.737 sum 2.681 -2.575 -0.028 3.718 Atomic orbital electron populations 1.68736 1.09171 1.32883 1.31945 1.27237 0.95903 1.05686 0.91159 0.84541 0.78913 0.73225 0.79501 1.17596 1.18235 1.18227 1.19423 0.96313 0.87870 1.39991 0.87429 1.24266 0.92331 0.94594 0.97089 1.67167 1.35010 0.97270 1.33719 1.18642 0.89177 0.91320 1.04186 1.19708 0.90574 0.90940 0.89990 1.23033 0.96835 1.00196 1.03129 1.23730 1.01299 0.87180 0.88758 1.68464 1.02732 1.38700 1.15477 1.25540 0.92352 0.91873 0.90309 1.68334 1.40263 1.01376 1.15638 1.26742 0.99898 1.04287 1.25609 1.84085 1.10884 0.94247 1.72259 0.87257 0.83178 0.77338 0.75551 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.53 10.64 21.88 0.23 -36.30 14 2 C 0.02 0.91 5.50 85.35 0.47 1.38 14 3 Si 1.02 32.78 29.56 68.60 2.03 34.81 14 4 H -0.25 -7.98 7.11 99.48 0.71 -7.27 14 5 H -0.26 -7.87 7.11 99.48 0.71 -7.16 14 6 H -0.26 -7.86 7.11 99.48 0.71 -7.15 14 7 C -0.39 -19.74 9.45 23.17 0.22 -19.52 14 8 H 0.11 5.19 7.85 -2.91 -0.02 5.16 14 9 C 0.17 9.24 7.11 85.16 0.61 9.85 14 10 N -0.61 -32.96 10.09 -184.02 -1.86 -34.81 14 11 C 0.11 5.42 6.66 41.60 0.28 5.70 14 12 C 0.23 10.30 6.78 41.95 0.28 10.58 14 13 C -0.21 -7.67 9.75 22.68 0.22 -7.45 14 14 C 0.16 4.45 11.29 84.60 0.96 5.41 14 15 N -0.54 -16.29 10.43 -200.28 -2.09 -18.37 14 16 C 0.29 9.05 12.28 180.92 2.22 11.27 14 17 N -0.54 -21.64 9.98 -189.08 -1.89 -23.52 14 18 C -0.42 -21.37 10.67 67.58 0.72 -20.64 14 19 S 0.13 6.40 20.12 -56.49 -1.14 5.27 14 20 H 0.31 12.49 8.29 -92.70 -0.77 11.72 14 21 H 0.15 5.53 7.77 -2.91 -0.02 5.51 14 22 H 0.21 3.92 8.06 -2.91 -0.02 3.90 14 23 H 0.23 5.08 8.06 -2.91 -0.02 5.05 14 24 H 0.15 7.15 8.00 -2.91 -0.02 7.13 14 Total: -1.00 -61.97 239.64 2.50 -59.47 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.24 Total: 16.89 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 5.97 Total: -3.43 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -5.60 Total: -113.01 kcal Atomic # 14 Polarization: 32.78 SS G_CDS: 2.03 Total: 34.81 kcal Atomic # 16 Polarization: 6.40 SS G_CDS: -1.14 Total: 5.27 kcal Total: -61.97 2.50 -59.47 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307122631.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.119 kcal (2) G-P(sol) polarization free energy of solvation -61.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds