Wall clock time and date at job start Mon Mar 30 2020 03:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86800 * 119.99850 * 2 1 4 4 H 1.48502 * 109.47400 * 239.99915 * 3 2 1 5 5 H 1.48502 * 109.46998 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47028 * 120.00092 * 3 2 1 7 7 C 1.39887 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00423 * 197.59606 * 7 2 1 9 9 C 1.41273 * 120.00188 * 17.59008 * 7 2 1 10 10 C 1.40758 * 120.59527 * 203.59140 * 9 7 2 11 11 N 1.31496 * 120.34167 * 179.97438 * 10 9 7 12 12 C 1.32585 * 121.76069 * 0.02562 * 11 10 9 13 13 O 1.35483 * 119.40846 * 179.97438 * 12 11 10 14 14 C 1.39394 * 121.18491 * 0.27241 * 12 11 10 15 15 C 1.50695 * 120.24150 * 179.72639 * 14 12 11 16 16 F 1.39904 * 109.47019 * 179.97438 * 15 14 12 17 17 F 1.39895 * 109.47302 * 299.99957 * 15 14 12 18 18 F 1.39898 * 109.47203 * 60.00311 * 15 14 12 19 19 C 1.36715 * 119.51023 * 359.42800 * 14 12 11 20 20 H 0.97000 * 120.00002 * 0.02562 * 1 2 3 21 21 H 1.08002 * 119.82991 * 0.02562 * 10 9 7 22 22 H 0.96707 * 113.99766 * 89.99520 * 13 12 11 23 23 H 1.07999 * 120.80587 * 180.26377 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7464 -0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2114 -0.0005 8 1 3.0504 -1.2334 0.2822 9 6 1.3516 -2.4062 -0.3708 10 6 1.8309 -3.6537 0.0712 11 7 1.2154 -4.7626 -0.2761 12 6 0.1355 -4.7500 -1.0452 13 8 -0.4606 -5.9213 -1.3742 14 6 -0.3940 -3.5537 -1.5264 15 6 -1.6189 -3.5646 -2.4041 16 9 -1.9532 -2.2520 -2.7544 17 9 -1.3562 -4.3042 -3.5621 18 9 -2.6847 -4.1473 -1.7102 19 6 0.2025 -2.3701 -1.1910 20 1 -0.4850 0.8400 -0.0004 21 1 2.7081 -3.7002 0.6994 22 1 -1.1445 -6.2032 -0.7513 23 1 -0.1926 -1.4308 -1.5486 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307127914.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:22 Heat of formation + Delta-G solvation = -174.754847 kcal Electronic energy + Delta-G solvation = -16444.832349 eV Core-core repulsion = 13035.870570 eV Total energy + Delta-G solvation = -3408.961780 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.42769 -46.95980 -46.88834 -39.03457 -36.17529 -34.07602 -31.77114 -30.09055 -25.63490 -25.16806 -22.13591 -21.26999 -18.26715 -17.90666 -17.75043 -17.59711 -16.46395 -15.69678 -15.08277 -14.69161 -13.80442 -13.73196 -13.48923 -13.36057 -13.11146 -13.09071 -12.74926 -12.30850 -11.90504 -11.66447 -11.62309 -11.34509 -10.88969 -10.65821 -10.26547 -9.60194 -8.86670 -8.43005 -7.90561 -7.16108 -4.76584 1.98762 2.49812 2.88298 2.90459 2.95971 3.45941 3.65052 4.14069 4.57115 4.75877 4.91010 5.02385 5.36843 6.05534 6.34788 6.41535 6.68933 6.77599 6.95419 7.38525 7.46640 7.96907 8.22466 8.32936 8.49685 9.19935 9.75113 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.032542 B = 0.009822 C = 0.008077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.221379 B = 2850.201619 C = 3465.716917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.070 3.930 3 Si 0.921 3.079 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.431 4.431 8 H 0.092 0.908 9 C 0.053 3.947 10 C 0.013 3.987 11 N -0.470 5.470 12 C 0.187 3.813 13 O -0.483 6.483 14 C -0.210 4.210 15 C 0.516 3.484 16 F -0.183 7.183 17 F -0.181 7.181 18 F -0.188 7.188 19 C -0.084 4.084 20 H 0.292 0.708 21 H 0.141 0.859 22 H 0.370 0.630 23 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.784 0.398 -1.235 2.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.151 4.151 3 Si 0.744 3.256 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.460 4.460 8 H 0.110 0.890 9 C 0.048 3.952 10 C -0.149 4.149 11 N -0.185 5.185 12 C 0.008 3.992 13 O -0.287 6.287 14 C -0.215 4.215 15 C 0.461 3.539 16 F -0.164 7.164 17 F -0.163 7.163 18 F -0.169 7.169 19 C -0.109 4.109 20 H 0.103 0.897 21 H 0.158 0.842 22 H 0.223 0.777 23 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.387 -0.250 -1.475 2.040 hybrid contribution -0.637 1.499 0.011 1.629 sum -2.024 1.249 -1.464 2.793 Atomic orbital electron populations 1.69750 1.07886 1.30757 1.31676 1.26107 0.94922 1.02226 0.91860 0.86134 0.80066 0.78985 0.80432 1.18364 1.19937 1.18503 1.19603 0.98398 0.90480 1.37479 0.88958 1.18502 0.91976 0.94210 0.90481 1.22519 1.02353 0.86697 1.03288 1.66666 1.07556 1.33060 1.11260 1.17959 0.94641 0.83117 1.03493 1.84824 1.54978 1.38224 1.50627 1.20490 0.98014 0.96922 1.06089 1.18342 0.83874 0.72754 0.78893 1.93127 1.93445 1.37140 1.92694 1.93157 1.94035 1.77448 1.51631 1.93115 1.59702 1.84700 1.79408 1.21369 0.97262 0.95878 0.96418 0.89718 0.84176 0.77665 0.83583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.12 10.92 55.54 0.61 -17.52 14 2 C 0.07 1.56 5.17 -17.34 -0.09 1.47 14 3 Si 0.92 16.60 29.59 -169.99 -5.03 11.57 14 4 H -0.26 -4.68 7.11 56.52 0.40 -4.27 14 5 H -0.27 -4.87 7.11 56.52 0.40 -4.47 14 6 H -0.26 -4.62 7.11 56.52 0.40 -4.22 14 7 C -0.43 -10.09 9.07 -37.81 -0.34 -10.43 14 8 H 0.09 2.00 7.90 -52.49 -0.41 1.58 14 9 C 0.05 1.30 5.59 -106.66 -0.60 0.71 14 10 C 0.01 0.32 10.98 -16.74 -0.18 0.13 14 11 N -0.47 -11.37 10.37 -12.59 -0.13 -11.50 14 12 C 0.19 4.42 7.64 -16.80 -0.13 4.29 14 13 O -0.48 -10.17 12.43 -18.14 -0.23 -10.40 14 14 C -0.21 -4.93 5.36 -104.74 -0.56 -5.49 14 15 C 0.52 10.96 2.99 36.00 0.11 11.07 14 16 F -0.18 -3.84 16.01 2.25 0.04 -3.80 14 17 F -0.18 -3.79 16.95 2.25 0.04 -3.76 14 18 F -0.19 -3.74 16.95 2.25 0.04 -3.70 14 19 C -0.08 -2.07 8.11 -39.00 -0.32 -2.39 14 20 H 0.29 6.16 8.30 -40.82 -0.34 5.83 14 21 H 0.14 2.92 8.06 -52.49 -0.42 2.49 14 22 H 0.37 6.17 9.06 45.56 0.41 6.58 14 23 H 0.15 3.64 5.33 -52.49 -0.28 3.36 14 LS Contribution 228.11 15.07 3.44 3.44 Total: -1.00 -26.25 228.11 -3.18 -29.43 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 0.16 Total: 6.88 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.11 Total: -0.64 kcal Atomic # 7 Polarization: -29.49 SS G_CDS: 0.48 Total: -29.02 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -0.23 Total: -10.40 kcal Atomic # 9 Polarization: -11.37 SS G_CDS: 0.11 Total: -11.26 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.03 Total: 11.57 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -26.25 -3.18 -29.43 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307127914.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.328 kcal (2) G-P(sol) polarization free energy of solvation -26.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds