Wall clock time and date at job start Mon Mar 30 2020 03:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86800 * 119.99850 * 2 1 4 4 H 1.48502 * 109.47400 * 239.99915 * 3 2 1 5 5 H 1.48502 * 109.46998 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47028 * 120.00092 * 3 2 1 7 7 C 1.39887 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00423 * 197.59606 * 7 2 1 9 9 C 1.41273 * 120.00188 * 17.59008 * 7 2 1 10 10 C 1.40758 * 120.59527 * 203.59140 * 9 7 2 11 11 N 1.31496 * 120.34167 * 179.97438 * 10 9 7 12 12 C 1.32585 * 121.76069 * 0.02562 * 11 10 9 13 13 O 1.35483 * 119.40846 * 179.97438 * 12 11 10 14 14 C 1.39394 * 121.18491 * 0.27241 * 12 11 10 15 15 C 1.50695 * 120.24150 * 179.72639 * 14 12 11 16 16 F 1.39904 * 109.47019 * 179.97438 * 15 14 12 17 17 F 1.39895 * 109.47302 * 299.99957 * 15 14 12 18 18 F 1.39898 * 109.47203 * 60.00311 * 15 14 12 19 19 C 1.36715 * 119.51023 * 359.42800 * 14 12 11 20 20 H 0.97000 * 120.00002 * 0.02562 * 1 2 3 21 21 H 1.08002 * 119.82991 * 0.02562 * 10 9 7 22 22 H 0.96707 * 113.99766 * 89.99520 * 13 12 11 23 23 H 1.07999 * 120.80587 * 180.26377 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7464 -0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2114 -0.0005 8 1 3.0504 -1.2334 0.2822 9 6 1.3516 -2.4062 -0.3708 10 6 1.8309 -3.6537 0.0712 11 7 1.2154 -4.7626 -0.2761 12 6 0.1355 -4.7500 -1.0452 13 8 -0.4606 -5.9213 -1.3742 14 6 -0.3940 -3.5537 -1.5264 15 6 -1.6189 -3.5646 -2.4041 16 9 -1.9532 -2.2520 -2.7544 17 9 -1.3562 -4.3042 -3.5621 18 9 -2.6847 -4.1473 -1.7102 19 6 0.2025 -2.3701 -1.1910 20 1 -0.4850 0.8400 -0.0004 21 1 2.7081 -3.7002 0.6994 22 1 -1.1445 -6.2032 -0.7513 23 1 -0.1926 -1.4308 -1.5486 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307127914.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:21 Heat of formation + Delta-G solvation = -193.152690 kcal Electronic energy + Delta-G solvation = -16445.630140 eV Core-core repulsion = 13035.870570 eV Total energy + Delta-G solvation = -3409.759570 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -51.11617 -48.64073 -48.56882 -40.82002 -37.89376 -35.81568 -33.57289 -31.87859 -27.40522 -26.92284 -23.94461 -23.03475 -20.00747 -19.61847 -19.44145 -19.32135 -18.21507 -17.40649 -16.82343 -16.37646 -15.47018 -15.42013 -15.11385 -15.03581 -14.80000 -14.76707 -14.51446 -14.00578 -13.68099 -13.40236 -13.30246 -12.88240 -12.44918 -12.30796 -11.90154 -11.26221 -10.70233 -10.24871 -9.71431 -8.85807 -6.56163 0.19353 0.69253 1.41587 1.50450 1.55790 1.73760 2.14722 2.44228 2.82809 3.04451 3.19926 3.29145 3.60306 4.27319 4.53513 4.65808 4.90574 5.06691 5.18693 5.61145 5.64216 6.19803 6.46779 6.56615 6.85780 7.38030 8.08373 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.032542 B = 0.009822 C = 0.008077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.221379 B = 2850.201619 C = 3465.716917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.034 3.966 3 Si 0.993 3.007 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.449 4.449 8 H 0.106 0.894 9 C 0.030 3.970 10 C 0.007 3.993 11 N -0.482 5.482 12 C 0.176 3.824 13 O -0.485 6.485 14 C -0.217 4.217 15 C 0.524 3.476 16 F -0.182 7.182 17 F -0.178 7.178 18 F -0.179 7.179 19 C -0.104 4.104 20 H 0.300 0.700 21 H 0.162 0.838 22 H 0.390 0.610 23 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.358 1.172 -1.049 2.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.185 4.185 3 Si 0.812 3.188 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.176 1.176 7 C -0.476 4.476 8 H 0.124 0.876 9 C 0.025 3.975 10 C -0.155 4.155 11 N -0.198 5.198 12 C -0.003 4.003 13 O -0.291 6.291 14 C -0.222 4.222 15 C 0.469 3.531 16 F -0.163 7.163 17 F -0.160 7.160 18 F -0.160 7.160 19 C -0.129 4.129 20 H 0.111 0.889 21 H 0.179 0.821 22 H 0.246 0.754 23 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.986 0.493 -1.285 1.693 hybrid contribution -0.807 1.223 -0.022 1.466 sum -1.793 1.716 -1.307 2.805 Atomic orbital electron populations 1.69792 1.09397 1.32164 1.31521 1.26993 0.95522 1.05292 0.90708 0.85052 0.78672 0.74456 0.80580 1.18200 1.19372 1.17560 1.19981 0.99137 0.90906 1.37614 0.87648 1.18824 0.92420 0.95192 0.91040 1.22870 1.02897 0.86347 1.03373 1.66717 1.07993 1.33381 1.11752 1.18116 0.94862 0.83787 1.03500 1.84758 1.55609 1.37238 1.51485 1.20645 0.98669 0.96681 1.06207 1.18048 0.83477 0.72895 0.78707 1.93129 1.93368 1.37159 1.92651 1.93161 1.94053 1.77363 1.51392 1.93129 1.59094 1.84527 1.79244 1.21362 0.98130 0.95936 0.97455 0.88911 0.82062 0.75358 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.15 10.92 21.82 0.24 -36.91 14 2 C 0.03 1.46 5.17 85.23 0.44 1.90 14 3 Si 0.99 32.61 29.59 68.60 2.03 34.64 14 4 H -0.26 -8.37 7.11 99.48 0.71 -7.67 14 5 H -0.27 -8.54 7.11 99.48 0.71 -7.84 14 6 H -0.25 -7.89 7.11 99.48 0.71 -7.18 14 7 C -0.45 -20.67 9.07 23.42 0.21 -20.45 14 8 H 0.11 4.42 7.90 -2.91 -0.02 4.40 14 9 C 0.03 1.47 5.59 -21.18 -0.12 1.35 14 10 C 0.01 0.34 10.98 85.36 0.94 1.28 14 11 N -0.48 -23.08 10.37 -306.54 -3.18 -26.26 14 12 C 0.18 8.21 7.64 84.86 0.65 8.86 14 13 O -0.48 -19.83 12.43 -87.83 -1.09 -20.92 14 14 C -0.22 -10.13 5.36 -19.94 -0.11 -10.24 14 15 C 0.52 21.84 2.99 71.23 0.21 22.05 14 16 F -0.18 -7.54 16.01 44.97 0.72 -6.82 14 17 F -0.18 -7.27 16.95 44.97 0.76 -6.51 14 18 F -0.18 -6.90 16.95 44.97 0.76 -6.13 14 19 C -0.10 -5.12 8.11 22.65 0.18 -4.94 14 20 H 0.30 12.45 8.30 -92.71 -0.77 11.68 14 21 H 0.16 6.56 8.06 -2.91 -0.02 6.54 14 22 H 0.39 12.41 9.06 -74.05 -0.67 11.74 14 23 H 0.14 6.92 5.33 -2.91 -0.02 6.90 14 Total: -1.00 -53.79 228.11 3.27 -50.52 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.62 Total: 18.58 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 2.41 Total: -0.18 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -2.94 Total: -63.17 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -1.09 Total: -20.92 kcal Atomic # 9 Polarization: -21.71 SS G_CDS: 2.24 Total: -19.46 kcal Atomic # 14 Polarization: 32.61 SS G_CDS: 2.03 Total: 34.64 kcal Total: -53.79 3.27 -50.52 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307127914.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.634 kcal (2) G-P(sol) polarization free energy of solvation -53.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds