Wall clock time and date at job start Mon Mar 30 2020 03:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30787 * 1 3 3 Si 1.86797 * 120.00208 * 2 1 4 4 H 1.48494 * 109.47379 * 89.99945 * 3 2 1 5 5 H 1.48498 * 109.47109 * 210.00322 * 3 2 1 6 6 H 1.48502 * 109.47157 * 329.99900 * 3 2 1 7 7 C 1.39989 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00175 * 15.86149 * 7 2 1 9 9 C 1.41183 * 119.99995 * 195.85765 * 7 2 1 10 10 C 1.40742 * 119.74843 * 188.68791 * 9 7 2 11 11 C 1.38068 * 119.03883 * 179.77210 * 10 9 7 12 12 F 1.35105 * 120.74963 * 180.22031 * 11 10 9 13 13 C 1.39868 * 118.50496 * 0.49158 * 11 10 9 14 14 O 1.35730 * 120.30122 * 179.77501 * 13 11 10 15 15 C 1.42897 * 116.99837 * 179.97438 * 14 13 11 16 16 F 1.39892 * 109.47346 * 299.99364 * 15 14 13 17 17 F 1.39898 * 109.47307 * 59.99806 * 15 14 13 18 18 C 1.39352 * 119.40135 * 359.74531 * 13 11 10 19 19 N 1.31362 * 120.92334 * 0.02562 * 18 13 11 20 20 H 0.97000 * 120.00427 * 174.79790 * 1 2 3 21 21 H 1.08002 * 120.47722 * 359.97438 * 10 9 7 22 22 H 1.09005 * 109.47026 * 179.97438 * 15 14 13 23 23 H 1.07997 * 119.53802 * 180.02562 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4894 2.0464 1.4000 5 1 3.5394 1.4401 -0.7001 6 1 1.4394 2.6526 -0.7001 7 6 2.0078 -1.2124 -0.0005 8 1 1.4986 -2.1298 -0.2566 9 6 3.3793 -1.2359 0.3335 10 6 4.1212 -2.4185 0.1557 11 6 5.4626 -2.4237 0.4827 12 9 6.2086 -3.5386 0.3217 13 6 6.0306 -1.2505 0.9899 14 8 7.3447 -1.2163 1.3276 15 6 7.8514 0.0185 1.8381 16 9 7.6834 1.0234 0.8795 17 9 7.1552 0.3628 3.0017 18 6 5.2351 -0.1168 1.1448 19 7 3.9620 -0.1362 0.8219 20 1 -0.4851 -0.8365 -0.0762 21 1 3.6489 -3.3081 -0.2341 22 1 8.9112 -0.0910 2.0682 23 1 5.6715 0.7904 1.5359 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307139718.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:34 Heat of formation + Delta-G solvation = -177.514274 kcal Electronic energy + Delta-G solvation = -16290.709612 eV Core-core repulsion = 12881.628174 eV Total energy + Delta-G solvation = -3409.081438 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.00702 -48.19962 -47.01108 -39.16150 -37.29049 -33.86563 -30.84668 -30.24960 -26.47150 -24.81411 -22.78319 -21.41232 -18.78809 -18.52389 -18.06702 -17.56611 -16.10968 -16.05744 -15.12233 -15.09545 -14.47491 -13.97363 -13.47974 -13.43800 -13.39930 -13.20443 -13.00912 -12.52611 -12.24938 -12.24479 -12.04261 -11.07110 -10.77168 -10.11347 -9.96011 -9.32062 -8.52888 -8.18593 -7.89175 -7.52051 -4.97420 2.12605 2.16486 3.10760 3.45163 3.51142 3.79277 3.84295 4.25091 4.29078 4.60650 4.90194 4.94432 5.21383 5.40638 5.78386 6.02489 6.25324 6.67243 6.70065 7.12876 7.22156 7.54097 7.81785 8.00808 8.35210 9.14926 9.75916 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.028981 B = 0.010661 C = 0.008297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.930401 B = 2625.872467 C = 3374.071010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.048 3.952 3 Si 1.137 2.863 4 H -0.280 1.280 5 H -0.277 1.277 6 H -0.321 1.321 7 C -0.455 4.455 8 H 0.089 0.911 9 C 0.249 3.751 10 C -0.275 4.275 11 C 0.168 3.832 12 F -0.144 7.144 13 C -0.149 4.149 14 O -0.318 6.318 15 C 0.410 3.590 16 F -0.205 7.205 17 F -0.205 7.205 18 C 0.133 3.867 19 N -0.548 5.548 20 H 0.288 0.712 21 H 0.127 0.873 22 H 0.171 0.829 23 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.637 0.562 2.121 10.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.176 4.176 3 Si 0.968 3.032 4 H -0.207 1.207 5 H -0.204 1.204 6 H -0.252 1.252 7 C -0.485 4.485 8 H 0.107 0.893 9 C 0.127 3.873 10 C -0.299 4.299 11 C 0.143 3.857 12 F -0.123 7.123 13 C -0.196 4.196 14 O -0.236 6.236 15 C 0.319 3.681 16 F -0.187 7.187 17 F -0.187 7.187 18 C -0.032 4.032 19 N -0.267 5.267 20 H 0.099 0.901 21 H 0.145 0.855 22 H 0.187 0.813 23 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.894 2.611 2.254 10.478 hybrid contribution 0.643 -2.596 -0.064 2.675 sum 10.537 0.015 2.190 10.762 Atomic orbital electron populations 1.70629 1.08233 1.33380 1.28326 1.27809 0.95194 1.06128 0.88461 0.82233 0.72782 0.69861 0.78323 1.20668 1.20412 1.25249 1.20766 0.92786 0.97380 1.37609 0.89318 1.18362 0.93580 0.86060 0.89277 1.21527 0.91332 1.01959 1.15059 1.17030 0.89032 0.80167 0.99456 1.91405 1.76809 1.50597 1.93450 1.19128 0.83636 0.97043 1.19837 1.86379 1.24610 1.32382 1.80194 1.23187 0.95622 0.75706 0.73615 1.93071 1.96773 1.63293 1.65573 1.93073 1.82811 1.92339 1.50504 1.22599 0.90273 0.95009 0.95311 1.66862 1.10348 1.28596 1.20921 0.90067 0.85484 0.81290 0.83816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.33 13.65 55.55 0.76 -19.57 14 2 C 0.05 1.25 5.51 -17.34 -0.10 1.15 14 3 Si 1.14 26.94 25.93 -169.99 -4.41 22.53 14 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 14 5 H -0.28 -6.66 6.54 56.52 0.37 -6.29 14 6 H -0.32 -7.37 7.11 56.52 0.40 -6.97 14 7 C -0.46 -11.82 9.50 -37.81 -0.36 -12.18 14 8 H 0.09 2.26 8.06 -52.49 -0.42 1.83 14 9 C 0.25 6.34 6.27 -85.00 -0.53 5.81 14 10 C -0.28 -6.45 9.82 -38.70 -0.38 -6.83 14 11 C 0.17 3.81 7.38 -39.03 -0.29 3.52 14 12 F -0.14 -3.06 17.18 2.25 0.04 -3.02 14 13 C -0.15 -3.29 6.54 -38.56 -0.25 -3.54 14 14 O -0.32 -5.95 10.34 -18.90 -0.20 -6.15 14 15 C 0.41 5.82 5.97 101.05 0.60 6.42 14 16 F -0.21 -3.23 15.59 2.25 0.04 -3.20 14 17 F -0.21 -3.23 15.59 2.25 0.04 -3.19 14 18 C 0.13 3.03 9.44 -17.34 -0.16 2.87 14 19 N -0.55 -13.87 5.02 -11.00 -0.06 -13.93 14 20 H 0.29 7.07 8.73 -40.82 -0.36 6.71 14 21 H 0.13 2.74 8.06 -52.49 -0.42 2.31 14 22 H 0.17 1.40 8.14 -51.93 -0.42 0.97 14 23 H 0.14 3.00 5.09 -52.49 -0.27 2.73 14 LS Contribution 222.56 15.07 3.35 3.35 Total: -1.00 -28.24 222.56 -2.62 -30.87 By element: Atomic # 1 Polarization: -4.19 SS G_CDS: -0.72 Total: -4.91 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -1.47 Total: -2.78 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.70 Total: -33.50 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.20 Total: -6.15 kcal Atomic # 9 Polarization: -9.52 SS G_CDS: 0.11 Total: -9.41 kcal Atomic # 14 Polarization: 26.94 SS G_CDS: -4.41 Total: 22.53 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -28.24 -2.62 -30.87 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307139718.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.648 kcal (2) G-P(sol) polarization free energy of solvation -28.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds