Wall clock time and date at job start Mon Mar 30 2020 03:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30787 * 1 3 3 Si 1.86797 * 120.00208 * 2 1 4 4 H 1.48494 * 109.47379 * 89.99945 * 3 2 1 5 5 H 1.48498 * 109.47109 * 210.00322 * 3 2 1 6 6 H 1.48502 * 109.47157 * 329.99900 * 3 2 1 7 7 C 1.39989 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00175 * 15.86149 * 7 2 1 9 9 C 1.41183 * 119.99995 * 195.85765 * 7 2 1 10 10 C 1.40742 * 119.74843 * 188.68791 * 9 7 2 11 11 C 1.38068 * 119.03883 * 179.77210 * 10 9 7 12 12 F 1.35105 * 120.74963 * 180.22031 * 11 10 9 13 13 C 1.39868 * 118.50496 * 0.49158 * 11 10 9 14 14 O 1.35730 * 120.30122 * 179.77501 * 13 11 10 15 15 C 1.42897 * 116.99837 * 179.97438 * 14 13 11 16 16 F 1.39892 * 109.47346 * 299.99364 * 15 14 13 17 17 F 1.39898 * 109.47307 * 59.99806 * 15 14 13 18 18 C 1.39352 * 119.40135 * 359.74531 * 13 11 10 19 19 N 1.31362 * 120.92334 * 0.02562 * 18 13 11 20 20 H 0.97000 * 120.00427 * 174.79790 * 1 2 3 21 21 H 1.08002 * 120.47722 * 359.97438 * 10 9 7 22 22 H 1.09005 * 109.47026 * 179.97438 * 15 14 13 23 23 H 1.07997 * 119.53802 * 180.02562 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4894 2.0464 1.4000 5 1 3.5394 1.4401 -0.7001 6 1 1.4394 2.6526 -0.7001 7 6 2.0078 -1.2124 -0.0005 8 1 1.4986 -2.1298 -0.2566 9 6 3.3793 -1.2359 0.3335 10 6 4.1212 -2.4185 0.1557 11 6 5.4626 -2.4237 0.4827 12 9 6.2086 -3.5386 0.3217 13 6 6.0306 -1.2505 0.9899 14 8 7.3447 -1.2163 1.3276 15 6 7.8514 0.0185 1.8381 16 9 7.6834 1.0234 0.8795 17 9 7.1552 0.3628 3.0017 18 6 5.2351 -0.1168 1.1448 19 7 3.9620 -0.1362 0.8219 20 1 -0.4851 -0.8365 -0.0762 21 1 3.6489 -3.3081 -0.2341 22 1 8.9112 -0.0910 2.0682 23 1 5.6715 0.7904 1.5359 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307139718.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:34 Heat of formation + Delta-G solvation = -195.433825 kcal Electronic energy + Delta-G solvation = -16291.486662 eV Core-core repulsion = 12881.628174 eV Total energy + Delta-G solvation = -3409.858488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.21033 -49.94587 -48.21835 -40.93059 -38.92150 -35.76843 -32.69698 -32.07183 -28.04225 -26.39275 -24.52916 -23.21497 -20.69100 -19.99094 -19.52085 -18.79703 -17.92620 -17.59749 -16.85455 -16.62052 -16.31853 -15.34861 -15.28876 -15.10607 -14.83561 -14.73824 -14.56094 -14.24465 -13.99563 -13.85845 -13.48558 -12.85394 -12.50734 -11.93478 -11.86618 -11.24489 -10.37116 -10.06571 -9.71982 -9.46457 -6.90456 0.27492 0.30947 1.55253 1.62228 1.79128 1.96368 2.37273 2.39650 2.64515 3.10594 3.26750 3.60113 3.61584 3.79633 4.00977 4.22633 4.51500 4.84537 4.85069 5.28365 5.34581 5.78107 5.87226 6.16826 6.44023 7.26630 7.82428 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.028981 B = 0.010661 C = 0.008297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.930401 B = 2625.872467 C = 3374.071010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.026 3.974 3 Si 1.164 2.836 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.312 1.312 7 C -0.485 4.485 8 H 0.082 0.918 9 C 0.238 3.762 10 C -0.278 4.278 11 C 0.160 3.840 12 F -0.134 7.134 13 C -0.126 4.126 14 O -0.324 6.324 15 C 0.403 3.597 16 F -0.214 7.214 17 F -0.214 7.214 18 C 0.119 3.881 19 N -0.566 5.566 20 H 0.288 0.712 21 H 0.140 0.860 22 H 0.240 0.760 23 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.831 0.794 2.611 13.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.194 4.194 3 Si 0.993 3.007 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.243 1.243 7 C -0.516 4.516 8 H 0.100 0.900 9 C 0.115 3.885 10 C -0.301 4.301 11 C 0.135 3.865 12 F -0.113 7.113 13 C -0.174 4.174 14 O -0.242 6.242 15 C 0.313 3.687 16 F -0.196 7.196 17 F -0.196 7.196 18 C -0.044 4.044 19 N -0.286 5.286 20 H 0.100 0.900 21 H 0.158 0.842 22 H 0.256 0.744 23 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 12.110 2.848 2.753 12.742 hybrid contribution 0.222 -2.724 -0.155 2.737 sum 12.332 0.123 2.598 12.604 Atomic orbital electron populations 1.70636 1.08413 1.33495 1.30181 1.28374 0.95446 1.07478 0.88142 0.81880 0.71984 0.68697 0.78121 1.20713 1.21117 1.24315 1.20756 0.93463 0.97345 1.40059 0.90020 1.18501 0.93692 0.86884 0.89415 1.21666 0.91846 1.01886 1.14708 1.17089 0.88976 0.80883 0.99578 1.91429 1.76422 1.50071 1.93338 1.19222 0.85131 0.96158 1.16856 1.86406 1.22337 1.35380 1.80099 1.24339 0.97942 0.73835 0.72543 1.93057 1.96888 1.63565 1.66053 1.93058 1.83366 1.92260 1.50882 1.22944 0.89780 0.96159 0.95531 1.66830 1.11589 1.28866 1.21300 0.90032 0.84194 0.74427 0.81958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.21 13.65 21.83 0.30 -41.92 14 2 C 0.03 1.37 5.51 85.27 0.47 1.84 14 3 Si 1.16 54.34 25.93 68.60 1.78 56.12 14 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 14 5 H -0.28 -13.40 6.54 99.48 0.65 -12.75 14 6 H -0.31 -13.92 7.11 99.48 0.71 -13.22 14 7 C -0.49 -25.54 9.50 23.42 0.22 -25.32 14 8 H 0.08 4.27 8.06 -2.91 -0.02 4.24 14 9 C 0.24 12.05 6.27 40.20 0.25 12.30 14 10 C -0.28 -12.76 9.82 22.84 0.22 -12.54 14 11 C 0.16 6.93 7.38 22.62 0.17 7.10 14 12 F -0.13 -5.36 17.18 44.97 0.77 -4.59 14 13 C -0.13 -5.23 6.54 22.93 0.15 -5.08 14 14 O -0.32 -10.95 10.34 -90.54 -0.94 -11.88 14 15 C 0.40 9.71 5.97 113.37 0.68 10.39 14 16 F -0.21 -5.99 15.59 44.97 0.70 -5.29 14 17 F -0.21 -5.98 15.59 44.97 0.70 -5.28 14 18 C 0.12 5.19 9.44 85.03 0.80 5.99 14 19 N -0.57 -28.12 5.02 -188.73 -0.95 -29.07 14 20 H 0.29 14.47 8.73 -92.71 -0.81 13.66 14 21 H 0.14 5.92 8.06 -2.91 -0.02 5.90 14 22 H 0.24 2.46 8.14 -2.38 -0.02 2.44 14 23 H 0.16 6.38 5.09 -2.91 -0.01 6.36 14 Total: -1.00 -59.35 222.56 6.51 -52.84 By element: Atomic # 1 Polarization: -6.79 SS G_CDS: 1.17 Total: -5.62 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 2.97 Total: -5.32 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -0.65 Total: -70.99 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -0.94 Total: -11.88 kcal Atomic # 9 Polarization: -17.34 SS G_CDS: 2.17 Total: -15.16 kcal Atomic # 14 Polarization: 54.34 SS G_CDS: 1.78 Total: 56.12 kcal Total: -59.35 6.51 -52.84 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307139718.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.592 kcal (2) G-P(sol) polarization free energy of solvation -59.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds