Wall clock time and date at job start Mon Mar 30 2020 03:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86803 * 120.00158 * 2 1 4 4 H 1.48503 * 109.47284 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47056 * 299.99787 * 3 2 1 6 6 H 1.48504 * 109.46991 * 59.99752 * 3 2 1 7 7 C 1.39919 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00534 * 197.64357 * 7 2 1 9 9 C 1.41350 * 120.00089 * 17.64310 * 7 2 1 10 10 C 1.40762 * 120.65639 * 24.12175 * 9 7 2 11 11 N 1.31439 * 120.53505 * 180.02562 * 10 9 7 12 12 C 1.32147 * 122.10413 * 359.96888 * 11 10 9 13 13 C 1.38822 * 121.29028 * 0.02562 * 12 11 10 14 14 O 1.35984 * 120.35530 * 180.02562 * 13 12 11 15 15 C 1.42894 * 116.99860 * 359.97438 * 14 13 12 16 16 F 1.39897 * 109.47355 * 300.00340 * 15 14 13 17 17 F 1.39902 * 109.46895 * 60.00622 * 15 14 13 18 18 C 1.38885 * 119.29251 * 0.02562 * 13 12 11 19 19 F 1.35100 * 120.95195 * 180.02562 * 18 13 12 20 20 H 0.97003 * 119.99880 * 0.02562 * 1 2 3 21 21 H 1.07997 * 119.73416 * 359.97152 * 10 9 7 22 22 H 1.08001 * 119.35672 * 179.97438 * 12 11 10 23 23 H 1.09007 * 109.46959 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 0.0006 5 1 1.8838 2.3964 -1.2125 6 1 1.8837 2.3965 1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0499 -1.2337 0.2840 9 6 1.3512 -2.4073 -0.3699 10 6 0.2130 -2.3740 -1.1974 11 7 -0.3963 -3.4872 -1.5400 12 6 0.0234 -4.6718 -1.1317 13 6 1.1376 -4.7994 -0.3135 14 8 1.5531 -6.0280 0.0951 15 6 0.7947 -7.1522 -0.3552 16 9 -0.5254 -7.0338 0.0925 17 9 0.8108 -7.1958 -1.7535 18 6 1.8233 -3.6587 0.0834 19 9 2.9120 -3.7440 0.8788 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1633 -1.4262 -1.5529 22 1 -0.5113 -5.5581 -1.4399 23 1 1.2320 -8.0683 0.0422 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307272015.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:50 Heat of formation + Delta-G solvation = -171.733116 kcal Electronic energy + Delta-G solvation = -16212.136151 eV Core-core repulsion = 12803.305404 eV Total energy + Delta-G solvation = -3408.830748 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.95758 -47.44017 -46.96237 -38.97004 -37.14039 -34.16630 -30.65934 -29.42119 -26.06260 -25.48140 -21.97834 -21.82733 -18.76928 -17.93800 -17.53069 -17.12011 -16.41984 -15.61513 -15.25817 -14.67522 -14.59524 -13.83507 -13.46290 -13.35150 -13.25653 -13.02874 -12.71927 -12.38011 -12.04598 -11.90975 -11.53322 -11.39259 -11.05555 -10.62457 -10.20477 -9.59803 -8.37431 -8.04329 -7.57552 -7.15266 -4.74058 2.34394 2.46183 2.93089 2.98297 3.00373 3.10180 3.70788 3.82654 4.33367 4.64281 4.96347 5.30132 5.43751 5.88152 5.97916 6.26013 6.74757 6.81304 7.02841 7.08062 7.62207 7.76844 8.06337 8.37238 8.39418 9.42203 9.80192 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.050539 B = 0.007652 C = 0.007035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.897587 B = 3658.416654 C = 3979.167727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.073 3.927 3 Si 0.923 3.077 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.270 1.270 7 C -0.429 4.429 8 H 0.092 0.908 9 C 0.060 3.940 10 C 0.048 3.952 11 N -0.450 5.450 12 C -0.085 4.085 13 C 0.049 3.951 14 O -0.322 6.322 15 C 0.412 3.588 16 F -0.202 7.202 17 F -0.202 7.202 18 C -0.019 4.019 19 F -0.146 7.146 20 H 0.291 0.709 21 H 0.163 0.837 22 H 0.136 0.864 23 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 -5.738 -0.137 5.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.148 4.148 3 Si 0.746 3.254 4 H -0.179 1.179 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.457 4.457 8 H 0.110 0.890 9 C 0.054 3.946 10 C -0.118 4.118 11 N -0.159 5.159 12 C -0.237 4.237 13 C 0.004 3.996 14 O -0.239 6.239 15 C 0.321 3.679 16 F -0.184 7.184 17 F -0.184 7.184 18 C -0.045 4.045 19 F -0.125 7.125 20 H 0.102 0.898 21 H 0.180 0.820 22 H 0.154 0.846 23 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.853 -5.675 -0.514 5.762 hybrid contribution 0.937 0.494 0.617 1.226 sum 1.790 -5.182 0.103 5.483 Atomic orbital electron populations 1.69771 1.07827 1.30570 1.31476 1.26072 0.94927 1.02092 0.91712 0.86002 0.80961 0.79447 0.79014 1.17944 1.19111 1.19484 1.19595 0.98556 0.90293 1.37279 0.89037 1.18504 0.93794 0.90597 0.91677 1.22987 0.95297 0.95505 0.98051 1.67098 1.29659 0.98065 1.21056 1.22036 0.98358 0.96689 1.06654 1.19776 0.97689 0.82049 1.00095 1.86544 1.53241 1.13504 1.70640 1.23200 0.76983 0.92251 0.75467 1.93078 1.39856 1.96636 1.88812 1.93074 1.96121 1.96767 1.32468 1.17293 0.91894 0.91630 1.03671 1.91306 1.52127 1.96842 1.72208 0.89765 0.82020 0.84640 0.81160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.57 10.95 55.55 0.61 -17.96 14 2 C 0.07 1.71 5.16 -17.34 -0.09 1.63 14 3 Si 0.92 17.30 29.59 -169.99 -5.03 12.27 14 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 14 5 H -0.27 -4.85 7.11 56.52 0.40 -4.45 14 6 H -0.27 -4.97 7.11 56.52 0.40 -4.57 14 7 C -0.43 -10.96 8.84 -37.77 -0.33 -11.29 14 8 H 0.09 2.28 7.79 -52.49 -0.41 1.88 14 9 C 0.06 1.61 5.59 -106.62 -0.60 1.01 14 10 C 0.05 1.27 9.90 -16.77 -0.17 1.11 14 11 N -0.45 -11.65 10.33 -12.48 -0.13 -11.78 14 12 C -0.08 -2.06 9.45 -17.20 -0.16 -2.22 14 13 C 0.05 1.19 6.50 -39.13 -0.25 0.94 14 14 O -0.32 -6.59 10.35 -19.69 -0.20 -6.79 14 15 C 0.41 6.30 5.98 101.05 0.60 6.90 14 16 F -0.20 -3.41 15.60 2.25 0.04 -3.37 14 17 F -0.20 -3.36 15.60 2.25 0.04 -3.33 14 18 C -0.02 -0.48 7.39 -38.21 -0.28 -0.77 14 19 F -0.15 -3.73 16.73 2.25 0.04 -3.69 14 20 H 0.29 6.20 8.30 -40.82 -0.34 5.86 14 21 H 0.16 4.20 6.14 -52.49 -0.32 3.88 14 22 H 0.14 3.03 5.07 -52.49 -0.27 2.76 14 23 H 0.17 1.55 8.14 -51.93 -0.42 1.13 14 LS Contribution 224.69 15.07 3.39 3.39 Total: -1.00 -28.78 224.69 -3.10 -31.88 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -0.55 Total: 2.09 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.28 Total: -2.69 kcal Atomic # 7 Polarization: -30.22 SS G_CDS: 0.48 Total: -29.74 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.20 Total: -6.79 kcal Atomic # 9 Polarization: -10.50 SS G_CDS: 0.11 Total: -10.39 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -28.78 -3.10 -31.88 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307272015.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.857 kcal (2) G-P(sol) polarization free energy of solvation -28.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds