Wall clock time and date at job start Mon Mar 30 2020 03:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86803 * 120.00158 * 2 1 4 4 H 1.48503 * 109.47284 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47056 * 299.99787 * 3 2 1 6 6 H 1.48504 * 109.46991 * 59.99752 * 3 2 1 7 7 C 1.39919 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00534 * 197.64357 * 7 2 1 9 9 C 1.41350 * 120.00089 * 17.64310 * 7 2 1 10 10 C 1.40762 * 120.65639 * 24.12175 * 9 7 2 11 11 N 1.31439 * 120.53505 * 180.02562 * 10 9 7 12 12 C 1.32147 * 122.10413 * 359.96888 * 11 10 9 13 13 C 1.38822 * 121.29028 * 0.02562 * 12 11 10 14 14 O 1.35984 * 120.35530 * 180.02562 * 13 12 11 15 15 C 1.42894 * 116.99860 * 359.97438 * 14 13 12 16 16 F 1.39897 * 109.47355 * 300.00340 * 15 14 13 17 17 F 1.39902 * 109.46895 * 60.00622 * 15 14 13 18 18 C 1.38885 * 119.29251 * 0.02562 * 13 12 11 19 19 F 1.35100 * 120.95195 * 180.02562 * 18 13 12 20 20 H 0.97003 * 119.99880 * 0.02562 * 1 2 3 21 21 H 1.07997 * 119.73416 * 359.97152 * 10 9 7 22 22 H 1.08001 * 119.35672 * 179.97438 * 12 11 10 23 23 H 1.09007 * 109.46959 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 0.0006 5 1 1.8838 2.3964 -1.2125 6 1 1.8837 2.3965 1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0499 -1.2337 0.2840 9 6 1.3512 -2.4073 -0.3699 10 6 0.2130 -2.3740 -1.1974 11 7 -0.3963 -3.4872 -1.5400 12 6 0.0234 -4.6718 -1.1317 13 6 1.1376 -4.7994 -0.3135 14 8 1.5531 -6.0280 0.0951 15 6 0.7947 -7.1522 -0.3552 16 9 -0.5254 -7.0338 0.0925 17 9 0.8108 -7.1958 -1.7535 18 6 1.8233 -3.6587 0.0834 19 9 2.9120 -3.7440 0.8788 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1633 -1.4262 -1.5529 22 1 -0.5113 -5.5581 -1.4399 23 1 1.2320 -8.0683 0.0422 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307272015.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:50 Heat of formation + Delta-G solvation = -190.746701 kcal Electronic energy + Delta-G solvation = -16212.960642 eV Core-core repulsion = 12803.305404 eV Total energy + Delta-G solvation = -3409.655239 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.25150 -49.41721 -48.26028 -40.77703 -38.89231 -36.03202 -32.59444 -31.26346 -27.91784 -26.93762 -23.89171 -23.63023 -20.43055 -19.45919 -18.90161 -18.85677 -18.30154 -17.34181 -16.99691 -16.51761 -16.22284 -15.32485 -15.27769 -14.90531 -14.76205 -14.57205 -14.51837 -14.02222 -13.79274 -13.41458 -13.31493 -13.10551 -12.79620 -12.22125 -11.93060 -11.34392 -10.35107 -10.01422 -9.46628 -8.95152 -6.69508 0.45658 0.51212 1.38990 1.48026 1.57114 1.68458 2.14923 2.49579 2.57805 3.30320 3.51292 3.56570 3.74123 3.97772 4.16328 4.32573 4.83829 4.98524 5.12209 5.19753 5.64712 5.91779 6.11736 6.43677 6.48760 7.44705 8.04000 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.050539 B = 0.007652 C = 0.007035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.897587 B = 3658.416654 C = 3979.167727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.038 3.962 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.253 1.253 6 H -0.259 1.259 7 C -0.451 4.451 8 H 0.089 0.911 9 C 0.038 3.962 10 C 0.030 3.970 11 N -0.460 5.460 12 C -0.097 4.097 13 C 0.063 3.937 14 O -0.331 6.331 15 C 0.405 3.595 16 F -0.211 7.211 17 F -0.210 7.210 18 C -0.055 4.055 19 F -0.149 7.149 20 H 0.305 0.695 21 H 0.159 0.841 22 H 0.155 0.845 23 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 -5.604 0.061 5.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.182 4.182 3 Si 0.818 3.182 4 H -0.180 1.180 5 H -0.177 1.177 6 H -0.184 1.184 7 C -0.479 4.479 8 H 0.107 0.893 9 C 0.033 3.967 10 C -0.136 4.136 11 N -0.169 5.169 12 C -0.249 4.249 13 C 0.016 3.984 14 O -0.248 6.248 15 C 0.316 3.684 16 F -0.193 7.193 17 F -0.192 7.192 18 C -0.081 4.081 19 F -0.128 7.128 20 H 0.117 0.883 21 H 0.176 0.824 22 H 0.172 0.828 23 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 1.220 -5.575 -0.319 5.716 hybrid contribution 0.768 0.371 0.578 1.030 sum 1.987 -5.204 0.259 5.577 Atomic orbital electron populations 1.69772 1.09280 1.32550 1.30185 1.27014 0.95671 1.05086 0.90400 0.84878 0.79136 0.74404 0.79734 1.18042 1.17730 1.18354 1.19880 0.98704 0.91308 1.37969 0.89265 1.18798 0.94259 0.91547 0.92135 1.22902 0.95986 0.95596 0.99138 1.67050 1.29938 0.98575 1.21317 1.22309 0.98837 0.96733 1.07045 1.19720 0.96628 0.83374 0.98630 1.86543 1.54405 1.13099 1.70741 1.24392 0.76540 0.92305 0.75149 1.93058 1.40793 1.96594 1.88847 1.93058 1.96086 1.96629 1.33383 1.17538 0.92856 0.92603 1.05144 1.91275 1.52235 1.96901 1.72361 0.88306 0.82389 0.82840 0.74050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.93 10.95 21.82 0.24 -37.69 14 2 C 0.04 1.76 5.16 85.25 0.44 2.20 14 3 Si 1.00 34.34 29.59 68.60 2.03 36.37 14 4 H -0.26 -8.81 7.11 99.48 0.71 -8.10 14 5 H -0.25 -8.16 7.11 99.48 0.71 -7.45 14 6 H -0.26 -8.45 7.11 99.48 0.71 -7.74 14 7 C -0.45 -23.34 8.84 23.44 0.21 -23.13 14 8 H 0.09 4.52 7.79 -2.91 -0.02 4.50 14 9 C 0.04 2.10 5.59 -21.16 -0.12 1.98 14 10 C 0.03 1.63 9.90 85.37 0.84 2.48 14 11 N -0.46 -24.09 10.33 -193.39 -2.00 -26.09 14 12 C -0.10 -4.69 9.45 84.79 0.80 -3.89 14 13 C 0.06 3.03 6.50 22.56 0.15 3.18 14 14 O -0.33 -13.05 10.35 -93.37 -0.97 -14.01 14 15 C 0.40 11.27 5.98 113.37 0.68 11.95 14 16 F -0.21 -6.68 15.60 44.97 0.70 -5.98 14 17 F -0.21 -6.52 15.60 44.97 0.70 -5.81 14 18 C -0.06 -2.94 7.39 23.16 0.17 -2.76 14 19 F -0.15 -7.71 16.73 44.97 0.75 -6.96 14 20 H 0.31 12.69 8.30 -92.71 -0.77 11.92 14 21 H 0.16 8.42 6.14 -2.91 -0.02 8.40 14 22 H 0.15 6.72 5.07 -2.91 -0.01 6.71 14 23 H 0.24 3.23 8.14 -2.38 -0.02 3.21 14 Total: -1.00 -62.63 224.69 5.91 -56.72 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.28 Total: 11.44 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 3.17 Total: -7.99 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -1.76 Total: -63.77 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.97 Total: -14.01 kcal Atomic # 9 Polarization: -20.91 SS G_CDS: 2.15 Total: -18.75 kcal Atomic # 14 Polarization: 34.34 SS G_CDS: 2.03 Total: 36.37 kcal Total: -62.63 5.91 -56.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307272015.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.028 kcal (2) G-P(sol) polarization free energy of solvation -62.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds