Wall clock time and date at job start Mon Mar 30 2020 03:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86803 * 119.99889 * 2 1 4 4 H 1.48498 * 109.47113 * 274.98884 * 3 2 1 5 5 H 1.48501 * 109.47129 * 34.99003 * 3 2 1 6 6 H 1.48504 * 109.47048 * 154.98640 * 3 2 1 7 7 C 1.40061 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00005 * 186.27036 * 7 2 1 9 9 C 1.41039 * 119.99973 * 6.27016 * 7 2 1 10 10 N 1.33687 * 119.89026 * 353.61956 * 9 7 2 11 11 C 1.31344 * 121.57337 * 180.02562 * 10 9 7 12 12 C 1.38956 * 121.18383 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.16733 * 179.97438 * 12 11 10 14 14 F 1.39902 * 109.47466 * 0.02562 * 13 12 11 15 15 F 1.39904 * 109.46946 * 120.00126 * 13 12 11 16 16 F 1.39905 * 109.47183 * 240.00020 * 13 12 11 17 17 C 1.38600 * 119.65925 * 0.25711 * 12 11 10 18 18 C 1.38991 * 118.53488 * 359.48432 * 17 12 11 19 19 O 1.35576 * 120.58749 * 180.26193 * 18 17 12 20 20 H 0.97004 * 120.00193 * 359.97438 * 1 2 3 21 21 H 1.08002 * 119.40994 * 179.97438 * 11 10 9 22 22 H 1.07995 * 120.73422 * 179.73933 * 17 12 11 23 23 H 0.96703 * 113.99939 * 270.27727 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3836 2.1073 -1.3948 5 1 1.4957 2.6200 0.8029 6 1 3.5878 1.4121 0.5920 7 6 2.0079 -1.2129 -0.0005 8 1 3.0830 -1.2158 0.1016 9 6 1.3090 -2.4307 -0.1345 10 7 -0.0278 -2.4353 -0.1324 11 6 -0.7119 -3.5499 -0.2544 12 6 -0.0717 -4.7756 -0.3918 13 6 -0.8792 -6.0405 -0.5296 14 9 -2.2428 -5.7298 -0.4921 15 9 -0.5754 -6.6573 -1.7480 16 9 -0.5692 -6.9087 0.5227 17 6 1.3132 -4.8294 -0.3956 18 6 2.0242 -3.6416 -0.2713 19 8 3.3799 -3.6453 -0.2753 20 1 -0.4850 0.8401 0.0004 21 1 -1.7912 -3.5132 -0.2478 22 1 1.8286 -5.7730 -0.4971 23 1 3.7756 -3.7440 0.6016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307300952.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:54 Heat of formation + Delta-G solvation = -189.577008 kcal Electronic energy + Delta-G solvation = -16096.021213 eV Core-core repulsion = 12686.416696 eV Total energy + Delta-G solvation = -3409.604517 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.95316 -48.48667 -48.42096 -40.57434 -37.63422 -35.87338 -33.06052 -31.19304 -28.79586 -25.81996 -24.00976 -22.87060 -19.76848 -19.58567 -19.29974 -19.11273 -17.80436 -17.65406 -16.57511 -16.08943 -15.55136 -15.33738 -15.20601 -14.91390 -14.66757 -14.63465 -14.40920 -13.95537 -13.66816 -13.20515 -13.07662 -12.89245 -12.59864 -12.08781 -11.56850 -11.39414 -10.38019 -9.77377 -9.65323 -8.53852 -6.76370 0.43630 0.78421 1.40175 1.48700 1.56088 1.95041 2.15442 2.56989 3.11962 3.30688 3.44299 3.72968 3.86142 4.11193 4.17126 4.61088 4.99285 5.12900 5.28583 5.31417 5.78184 6.05098 6.34073 6.61029 7.17391 7.85965 8.19375 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.043439 B = 0.007776 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.434532 B = 3599.880184 C = 4064.461783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.729 5.729 2 C 0.017 3.983 3 Si 0.997 3.003 4 H -0.264 1.264 5 H -0.263 1.263 6 H -0.250 1.250 7 C -0.411 4.411 8 H 0.104 0.896 9 C 0.204 3.796 10 N -0.506 5.506 11 C 0.163 3.837 12 C -0.386 4.386 13 C 0.535 3.465 14 F -0.184 7.184 15 F -0.191 7.191 16 F -0.189 7.189 17 C -0.036 4.036 18 C -0.073 4.073 19 O -0.491 6.491 20 H 0.290 0.710 21 H 0.149 0.851 22 H 0.132 0.868 23 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.014 -2.994 1.147 3.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.349 5.349 2 C -0.208 4.208 3 Si 0.815 3.185 4 H -0.189 1.189 5 H -0.187 1.187 6 H -0.173 1.173 7 C -0.439 4.439 8 H 0.122 0.878 9 C 0.081 3.919 10 N -0.220 5.220 11 C -0.006 4.006 12 C -0.394 4.394 13 C 0.480 3.520 14 F -0.165 7.165 15 F -0.172 7.172 16 F -0.170 7.170 17 C -0.059 4.059 18 C -0.122 4.122 19 O -0.299 6.299 20 H 0.101 0.899 21 H 0.166 0.834 22 H 0.150 0.850 23 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.385 -1.993 0.639 2.128 hybrid contribution 0.453 -0.687 0.334 0.888 sum 0.838 -2.680 0.973 2.972 Atomic orbital electron populations 1.70172 1.09179 1.30539 1.24964 1.27238 0.95857 1.05159 0.92555 0.84965 0.79229 0.74761 0.79513 1.18880 1.18701 1.17276 1.20223 0.96155 0.90051 1.37498 0.87795 1.19507 0.88992 0.93336 0.90046 1.68912 1.07214 1.26163 1.19670 1.22783 1.00197 0.87241 0.90413 1.20196 0.94516 0.93227 1.31422 1.17948 0.77233 0.83843 0.72988 1.93085 1.34152 1.93020 1.96254 1.93138 1.93046 1.85027 1.46029 1.93137 1.92894 1.72698 1.58301 1.21036 0.92439 0.97682 0.94790 1.19294 0.83629 0.92542 1.16715 1.84693 1.15497 1.95538 1.34128 0.89865 0.83358 0.85023 0.76434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.20 11.49 21.85 0.25 -35.95 14 2 C 0.02 0.80 5.49 85.30 0.47 1.27 14 3 Si 1.00 34.51 29.57 68.60 2.03 36.54 14 4 H -0.26 -9.03 7.11 99.48 0.71 -8.32 14 5 H -0.26 -8.61 7.11 99.48 0.71 -7.90 14 6 H -0.25 -8.24 7.11 99.48 0.71 -7.53 14 7 C -0.41 -20.58 8.93 23.40 0.21 -20.37 14 8 H 0.10 4.85 7.35 -2.91 -0.02 4.82 14 9 C 0.20 10.68 6.56 40.30 0.26 10.94 14 10 N -0.51 -26.88 7.89 -188.72 -1.49 -28.37 14 11 C 0.16 7.67 10.59 84.94 0.90 8.57 14 12 C -0.39 -16.75 5.40 -19.61 -0.11 -16.85 14 13 C 0.53 20.17 3.32 71.24 0.24 20.40 14 14 F -0.18 -6.64 15.98 44.97 0.72 -5.92 14 15 F -0.19 -7.06 17.24 44.97 0.78 -6.28 14 16 F -0.19 -6.83 17.24 44.97 0.78 -6.05 14 17 C -0.04 -1.56 9.69 22.54 0.22 -1.35 14 18 C -0.07 -3.44 6.77 23.20 0.16 -3.28 14 19 O -0.49 -20.29 12.65 -88.84 -1.12 -21.41 14 20 H 0.29 12.79 8.29 -92.71 -0.77 12.02 14 21 H 0.15 6.29 7.14 -2.91 -0.02 6.27 14 22 H 0.13 5.03 8.06 -2.91 -0.02 5.00 14 23 H 0.38 11.98 9.06 -74.06 -0.67 11.31 14 Total: -1.00 -57.34 230.03 4.90 -52.44 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.62 Total: 15.68 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 2.35 Total: -0.68 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -1.24 Total: -64.32 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -1.12 Total: -21.41 kcal Atomic # 9 Polarization: -20.53 SS G_CDS: 2.27 Total: -18.26 kcal Atomic # 14 Polarization: 34.51 SS G_CDS: 2.03 Total: 36.54 kcal Total: -57.34 4.90 -52.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307300952.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.138 kcal (2) G-P(sol) polarization free energy of solvation -57.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds