Wall clock time and date at job start Mon Mar 30 2020 03:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86798 * 120.00019 * 2 1 4 4 H 1.48499 * 109.47385 * 239.99881 * 3 2 1 5 5 H 1.48500 * 109.47077 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47360 * 119.99997 * 3 2 1 7 7 C 1.40035 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99550 * 163.25379 * 7 2 1 9 9 C 1.41409 * 120.00145 * 343.52579 * 7 2 1 10 10 C 1.41205 * 121.02119 * 335.63444 * 9 7 2 11 11 C 1.36456 * 119.13951 * 179.72174 * 10 9 7 12 12 N 1.32170 * 121.32071 * 0.56101 * 11 10 9 13 13 C 1.32267 * 122.28804 * 359.71347 * 12 11 10 14 14 O 1.35749 * 119.66202 * 179.97438 * 13 12 11 15 15 C 1.42901 * 117.00155 * 0.02562 * 14 13 12 16 16 F 1.39903 * 109.46931 * 300.00439 * 15 14 13 17 17 F 1.39900 * 109.46992 * 59.99923 * 15 14 13 18 18 C 1.38896 * 120.67701 * 359.97438 * 13 12 11 19 19 F 1.35100 * 120.69151 * 180.02562 * 18 13 12 20 20 H 0.96994 * 120.00067 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.42848 * 359.97438 * 10 9 7 22 22 H 1.07995 * 119.34253 * 180.29203 * 11 10 9 23 23 H 1.08993 * 109.47271 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0954 1.6964 -1.2125 5 1 1.2766 2.7464 0.0006 6 1 3.0953 1.6964 1.2125 7 6 2.0078 -1.2127 0.0005 8 1 3.0534 -1.2326 -0.2690 9 6 1.3443 -2.4121 0.3484 10 6 0.1904 -2.3958 1.1621 11 6 -0.4227 -3.5755 1.4693 12 7 0.0485 -4.7295 1.0298 13 6 1.1278 -4.8085 0.2693 14 8 1.5654 -6.0225 -0.1519 15 6 0.8124 -7.1637 0.2637 16 9 0.8021 -7.2318 1.6610 17 9 -0.5002 -7.0530 -0.2075 18 6 1.8180 -3.6620 -0.1026 19 9 2.9201 -3.7422 -0.8798 20 1 -0.4850 0.8400 -0.0004 21 1 -0.2041 -1.4614 1.5331 22 1 -1.3081 -3.5665 2.0876 23 1 1.2689 -8.0671 -0.1405 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307338745.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:25 Heat of formation + Delta-G solvation = -172.410471 kcal Electronic energy + Delta-G solvation = -16201.716735 eV Core-core repulsion = 12792.856615 eV Total energy + Delta-G solvation = -3408.860120 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.44766 -47.27175 -46.58337 -38.96721 -36.91979 -34.22810 -30.73666 -29.10293 -26.46987 -25.27353 -21.84892 -21.70389 -18.76856 -17.64135 -17.23010 -16.94170 -16.01479 -15.62746 -15.20418 -14.64426 -14.56175 -13.64950 -13.47710 -13.05769 -12.85765 -12.73194 -12.65996 -12.09593 -11.77404 -11.66908 -11.46916 -11.22976 -11.12068 -10.55074 -10.28898 -9.60365 -8.46237 -8.21522 -7.40419 -7.08498 -4.84256 2.42805 2.53671 2.92137 2.94881 3.05364 3.25292 3.71054 4.08734 4.36271 4.96153 5.18567 5.37674 5.40746 5.77979 6.28380 6.45375 6.79348 6.94357 7.13334 7.27200 7.62953 7.89991 8.22240 8.40931 8.45505 9.13494 9.81081 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.050868 B = 0.007634 C = 0.007021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.307111 B = 3666.830021 C = 3987.097454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.077 3.923 3 Si 0.922 3.078 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.433 4.433 8 H 0.091 0.909 9 C 0.123 3.877 10 C -0.211 4.211 11 C 0.110 3.890 12 N -0.590 5.590 13 C 0.284 3.716 14 O -0.326 6.326 15 C 0.426 3.574 16 F -0.200 7.200 17 F -0.199 7.199 18 C -0.082 4.082 19 F -0.150 7.150 20 H 0.290 0.710 21 H 0.137 0.863 22 H 0.133 0.867 23 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.697 -4.389 0.821 4.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.145 4.145 3 Si 0.745 3.255 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.463 4.463 8 H 0.109 0.891 9 C 0.115 3.885 10 C -0.233 4.233 11 C -0.037 4.037 12 N -0.317 5.317 13 C 0.107 3.893 14 O -0.239 6.239 15 C 0.335 3.665 16 F -0.182 7.182 17 F -0.181 7.181 18 C -0.107 4.107 19 F -0.129 7.129 20 H 0.101 0.899 21 H 0.155 0.845 22 H 0.151 0.849 23 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.228 -5.061 0.902 5.146 hybrid contribution 0.563 1.352 -0.232 1.483 sum 0.791 -3.709 0.670 3.851 Atomic orbital electron populations 1.69752 1.07884 1.30496 1.31367 1.26060 0.94897 1.01993 0.91599 0.86111 0.80061 0.78757 0.80520 1.18484 1.19885 1.18320 1.19586 0.98249 0.90221 1.38242 0.89124 1.17695 0.91618 0.90158 0.89064 1.21791 0.99721 0.98740 1.03072 1.21401 0.97959 0.87083 0.97306 1.67039 1.14423 1.30843 1.19389 1.19300 0.92562 0.82435 0.95037 1.86743 1.52671 1.13209 1.71284 1.22863 0.77300 0.90713 0.75654 1.93057 1.96258 1.96487 1.32385 1.93062 1.40490 1.96582 1.87980 1.17690 0.93055 0.92047 1.07920 1.91283 1.51206 1.96846 1.73562 0.89894 0.84520 0.84915 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.37 10.93 55.55 0.61 -17.76 14 2 C 0.08 1.79 5.20 -17.34 -0.09 1.70 14 3 Si 0.92 17.36 29.59 -169.99 -5.03 12.33 14 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 14 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 14 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 14 7 C -0.43 -11.12 8.87 -37.70 -0.33 -11.45 14 8 H 0.09 2.27 7.79 -52.49 -0.41 1.87 14 9 C 0.12 3.26 5.60 -106.49 -0.60 2.67 14 10 C -0.21 -5.22 8.73 -39.10 -0.34 -5.56 14 11 C 0.11 2.58 11.10 -18.05 -0.20 2.38 14 12 N -0.59 -14.47 8.05 -13.66 -0.11 -14.58 14 13 C 0.28 7.09 7.20 -17.12 -0.12 6.97 14 14 O -0.33 -7.08 10.29 -18.96 -0.20 -7.27 14 15 C 0.43 7.33 6.06 101.05 0.61 7.95 14 16 F -0.20 -3.77 16.57 2.25 0.04 -3.74 14 17 F -0.20 -3.81 16.57 2.25 0.04 -3.78 14 18 C -0.08 -2.17 7.37 -38.27 -0.28 -2.45 14 19 F -0.15 -3.88 16.69 2.25 0.04 -3.84 14 20 H 0.29 6.17 8.29 -40.82 -0.34 5.83 14 21 H 0.14 3.33 6.22 -52.49 -0.33 3.01 14 22 H 0.13 2.66 8.06 -52.49 -0.42 2.24 14 23 H 0.16 1.75 8.14 -51.93 -0.42 1.33 14 LS Contribution 228.64 15.07 3.45 3.45 Total: -1.00 -28.96 228.64 -3.24 -32.20 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -0.71 Total: 0.80 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -1.36 Total: 2.20 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.50 Total: -32.34 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.20 Total: -7.27 kcal Atomic # 9 Polarization: -11.47 SS G_CDS: 0.11 Total: -11.36 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -28.96 -3.24 -32.20 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307338745.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.210 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds