Wall clock time and date at job start Mon Mar 30 2020 03:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86798 * 120.00019 * 2 1 4 4 H 1.48499 * 109.47385 * 239.99881 * 3 2 1 5 5 H 1.48500 * 109.47077 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47360 * 119.99997 * 3 2 1 7 7 C 1.40035 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99550 * 163.25379 * 7 2 1 9 9 C 1.41409 * 120.00145 * 343.52579 * 7 2 1 10 10 C 1.41205 * 121.02119 * 335.63444 * 9 7 2 11 11 C 1.36456 * 119.13951 * 179.72174 * 10 9 7 12 12 N 1.32170 * 121.32071 * 0.56101 * 11 10 9 13 13 C 1.32267 * 122.28804 * 359.71347 * 12 11 10 14 14 O 1.35749 * 119.66202 * 179.97438 * 13 12 11 15 15 C 1.42901 * 117.00155 * 0.02562 * 14 13 12 16 16 F 1.39903 * 109.46931 * 300.00439 * 15 14 13 17 17 F 1.39900 * 109.46992 * 59.99923 * 15 14 13 18 18 C 1.38896 * 120.67701 * 359.97438 * 13 12 11 19 19 F 1.35100 * 120.69151 * 180.02562 * 18 13 12 20 20 H 0.96994 * 120.00067 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.42848 * 359.97438 * 10 9 7 22 22 H 1.07995 * 119.34253 * 180.29203 * 11 10 9 23 23 H 1.08993 * 109.47271 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0954 1.6964 -1.2125 5 1 1.2766 2.7464 0.0006 6 1 3.0953 1.6964 1.2125 7 6 2.0078 -1.2127 0.0005 8 1 3.0534 -1.2326 -0.2690 9 6 1.3443 -2.4121 0.3484 10 6 0.1904 -2.3958 1.1621 11 6 -0.4227 -3.5755 1.4693 12 7 0.0485 -4.7295 1.0298 13 6 1.1278 -4.8085 0.2693 14 8 1.5654 -6.0225 -0.1519 15 6 0.8124 -7.1637 0.2637 16 9 0.8021 -7.2318 1.6610 17 9 -0.5002 -7.0530 -0.2075 18 6 1.8180 -3.6620 -0.1026 19 9 2.9201 -3.7422 -0.8798 20 1 -0.4850 0.8400 -0.0004 21 1 -0.2041 -1.4614 1.5331 22 1 -1.3081 -3.5665 2.0876 23 1 1.2689 -8.0671 -0.1405 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307338745.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:25 Heat of formation + Delta-G solvation = -191.836797 kcal Electronic energy + Delta-G solvation = -16202.559124 eV Core-core repulsion = 12792.856615 eV Total energy + Delta-G solvation = -3409.702509 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.88618 -49.25915 -48.03287 -40.78464 -38.67545 -36.06813 -32.63290 -30.94257 -28.32207 -26.82018 -23.71815 -23.51690 -20.49061 -19.22374 -18.71251 -18.67805 -17.93694 -17.39873 -16.96396 -16.50381 -16.23422 -15.35157 -15.13520 -14.66769 -14.54336 -14.36784 -14.35935 -13.82014 -13.49003 -13.27220 -13.13531 -12.99409 -12.76193 -12.24847 -12.00618 -11.35119 -10.36381 -10.13555 -9.29673 -8.88436 -6.78345 0.51875 0.68495 1.37907 1.50330 1.53124 1.73409 2.14529 2.54150 2.74604 3.33837 3.55717 3.72170 3.91488 3.94451 4.48251 4.53792 4.97118 5.07424 5.24390 5.41439 5.71276 6.02917 6.30867 6.51713 6.54493 7.23515 8.05529 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.050868 B = 0.007634 C = 0.007021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.307111 B = 3666.830021 C = 3987.097454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.042 3.958 3 Si 0.997 3.003 4 H -0.260 1.260 5 H -0.256 1.256 6 H -0.255 1.255 7 C -0.461 4.461 8 H 0.085 0.915 9 C 0.097 3.903 10 C -0.223 4.223 11 C 0.112 3.888 12 N -0.597 5.597 13 C 0.285 3.715 14 O -0.335 6.335 15 C 0.417 3.583 16 F -0.210 7.210 17 F -0.211 7.211 18 C -0.122 4.122 19 F -0.156 7.156 20 H 0.303 0.697 21 H 0.137 0.863 22 H 0.167 0.833 23 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.571 -4.001 0.970 4.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.179 4.179 3 Si 0.815 3.185 4 H -0.184 1.184 5 H -0.180 1.180 6 H -0.179 1.179 7 C -0.490 4.490 8 H 0.103 0.897 9 C 0.089 3.911 10 C -0.246 4.246 11 C -0.035 4.035 12 N -0.325 5.325 13 C 0.107 3.893 14 O -0.248 6.248 15 C 0.328 3.672 16 F -0.192 7.192 17 F -0.193 7.193 18 C -0.147 4.147 19 F -0.135 7.135 20 H 0.115 0.885 21 H 0.155 0.845 22 H 0.184 0.816 23 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 0.082 -4.701 1.052 4.818 hybrid contribution 0.549 1.171 -0.288 1.325 sum 0.630 -3.530 0.764 3.667 Atomic orbital electron populations 1.69747 1.09127 1.32356 1.30140 1.26938 0.95705 1.04805 0.90443 0.85023 0.78815 0.74235 0.80421 1.18406 1.17993 1.17941 1.19861 0.98339 0.91440 1.39343 0.89728 1.18099 0.92539 0.90753 0.89691 1.21817 0.99837 0.99321 1.03620 1.21916 0.98442 0.86451 0.96712 1.67192 1.14450 1.31125 1.19719 1.19451 0.92099 0.83464 0.94267 1.86726 1.53611 1.13186 1.71290 1.24080 0.76883 0.90994 0.75272 1.93033 1.96252 1.96387 1.33552 1.93034 1.41659 1.96581 1.88051 1.17977 0.93996 0.93099 1.09603 1.91241 1.51492 1.96931 1.73836 0.88510 0.84501 0.81566 0.74885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.10 10.93 21.84 0.24 -36.86 14 2 C 0.04 1.92 5.20 85.29 0.44 2.37 14 3 Si 1.00 34.51 29.59 68.60 2.03 36.54 14 4 H -0.26 -8.93 7.11 99.48 0.71 -8.23 14 5 H -0.26 -8.09 7.11 99.48 0.71 -7.39 14 6 H -0.26 -8.67 7.11 99.48 0.71 -7.96 14 7 C -0.46 -24.02 8.87 23.49 0.21 -23.81 14 8 H 0.08 4.36 7.79 -2.91 -0.02 4.34 14 9 C 0.10 5.27 5.60 -21.08 -0.12 5.15 14 10 C -0.22 -11.16 8.73 22.58 0.20 -10.96 14 11 C 0.11 5.18 11.10 84.23 0.93 6.12 14 12 N -0.60 -28.98 8.05 -309.95 -2.49 -31.47 14 13 C 0.28 14.27 7.20 84.79 0.61 14.88 14 14 O -0.33 -14.25 10.29 -90.74 -0.93 -15.19 14 15 C 0.42 13.42 6.06 113.37 0.69 14.11 14 16 F -0.21 -7.58 16.57 44.97 0.75 -6.83 14 17 F -0.21 -7.73 16.57 44.97 0.75 -6.99 14 18 C -0.12 -6.58 7.37 23.12 0.17 -6.41 14 19 F -0.16 -8.29 16.69 44.97 0.75 -7.54 14 20 H 0.30 12.48 8.29 -92.71 -0.77 11.71 14 21 H 0.14 6.70 6.22 -2.91 -0.02 6.68 14 22 H 0.17 6.38 8.06 -2.91 -0.02 6.36 14 23 H 0.24 4.06 8.14 -2.39 -0.02 4.04 14 Total: -1.00 -62.83 228.64 5.48 -57.35 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.27 Total: 9.55 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 3.13 Total: 1.45 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -2.25 Total: -68.33 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.93 Total: -15.19 kcal Atomic # 9 Polarization: -23.60 SS G_CDS: 2.24 Total: -21.36 kcal Atomic # 14 Polarization: 34.51 SS G_CDS: 2.03 Total: 36.54 kcal Total: -62.83 5.48 -57.35 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307338745.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.489 kcal (2) G-P(sol) polarization free energy of solvation -62.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds