Wall clock time and date at job start Mon Mar 30 2020 03:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30844 * 1 3 3 Si 1.86806 * 119.99634 * 2 1 4 4 H 1.48504 * 109.47164 * 239.99945 * 3 2 1 5 5 H 1.48499 * 109.47377 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46820 * 120.00350 * 3 2 1 7 7 C 1.39932 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00392 * 197.27105 * 7 2 1 9 9 C 1.41279 * 119.99925 * 17.27297 * 7 2 1 10 10 C 1.40995 * 120.64661 * 23.82503 * 9 7 2 11 11 C 1.38447 * 118.18651 * 180.21919 * 10 9 7 12 12 O 1.35949 * 120.30250 * 179.78799 * 11 10 9 13 13 C 1.42899 * 117.00021 * 179.71698 * 12 11 10 14 14 F 1.39902 * 109.46965 * 59.99803 * 13 12 11 15 15 F 1.39905 * 109.47249 * 300.00251 * 13 12 11 16 16 C 1.39128 * 119.38971 * 359.50695 * 11 10 9 17 17 N 1.32043 * 121.27858 * 0.23663 * 16 11 10 18 18 C 1.31711 * 121.99713 * 0.02562 * 17 16 11 19 19 F 1.35099 * 119.78173 * 179.97438 * 18 17 16 20 20 H 0.97002 * 120.00010 * 359.97438 * 1 2 3 21 21 H 1.08001 * 120.90461 * 359.97438 * 10 9 7 22 22 H 1.08998 * 109.47496 * 179.97438 * 13 12 11 23 23 H 1.07999 * 119.36144 * 180.25382 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.0961 1.6966 -1.2125 5 1 1.2774 2.7465 0.0006 6 1 3.0962 1.6965 1.2125 7 6 2.0082 -1.2118 -0.0005 8 1 3.0517 -1.2330 0.2771 9 6 1.3496 -2.4076 -0.3644 10 6 0.2013 -2.3756 -1.1818 11 6 -0.4063 -3.5774 -1.5032 12 8 -1.5184 -3.5963 -2.2850 13 6 -2.0840 -4.8755 -2.5776 14 9 -2.4524 -5.5065 -1.3846 15 9 -1.1398 -5.6605 -3.2481 16 6 0.1351 -4.7659 -1.0237 17 7 1.2149 -4.7700 -0.2639 18 6 1.8318 -3.6576 0.0782 19 9 2.9334 -3.7138 0.8583 20 1 -0.4850 0.8401 0.0004 21 1 -0.1959 -1.4388 -1.5440 22 1 -2.9643 -4.7481 -3.2076 23 1 -0.3369 -5.7034 -1.2781 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307354815.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:28 Heat of formation + Delta-G solvation = -187.202225 kcal Electronic energy + Delta-G solvation = -16163.671021 eV Core-core repulsion = 12754.169482 eV Total energy + Delta-G solvation = -3409.501539 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.19960 -49.37248 -48.21097 -40.85022 -38.65140 -36.24808 -32.75822 -31.15628 -27.88706 -26.83090 -24.33032 -23.31651 -20.38127 -19.36498 -18.79403 -18.78247 -18.56382 -17.58464 -16.64187 -16.51433 -16.20373 -15.39707 -15.04843 -14.80471 -14.66125 -14.56947 -14.54783 -13.92896 -13.64239 -13.52276 -13.14280 -13.07275 -12.72306 -12.43960 -12.04613 -11.36330 -10.47154 -10.25497 -9.35978 -8.88668 -6.70201 0.39276 0.65473 1.38517 1.49186 1.53859 1.79991 2.13921 2.46539 2.64394 3.17670 3.29033 3.62084 3.79981 4.00253 4.23963 4.38263 4.83540 5.00732 5.25136 5.34614 5.63284 5.92258 6.27922 6.43529 6.48400 7.12693 8.03625 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.032942 B = 0.008689 C = 0.007296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.777016 B = 3221.622557 C = 3836.585989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.038 3.962 3 Si 0.998 3.002 4 H -0.255 1.255 5 H -0.258 1.258 6 H -0.257 1.257 7 C -0.452 4.452 8 H 0.093 0.907 9 C 0.054 3.946 10 C -0.164 4.164 11 C 0.076 3.924 12 O -0.326 6.326 13 C 0.402 3.598 14 F -0.213 7.213 15 F -0.212 7.212 16 C -0.079 4.079 17 N -0.477 5.477 18 C 0.118 3.882 19 F -0.140 7.140 20 H 0.304 0.696 21 H 0.142 0.858 22 H 0.243 0.757 23 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.373 0.135 -5.644 7.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.182 4.182 3 Si 0.816 3.184 4 H -0.179 1.179 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.479 4.479 8 H 0.111 0.889 9 C 0.048 3.952 10 C -0.190 4.190 11 C 0.031 3.969 12 O -0.243 6.243 13 C 0.313 3.687 14 F -0.195 7.195 15 F -0.194 7.194 16 C -0.237 4.237 17 N -0.191 5.191 18 C -0.041 4.041 19 F -0.120 7.120 20 H 0.115 0.885 21 H 0.159 0.841 22 H 0.259 0.741 23 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.352 -0.389 -5.387 7.604 hybrid contribution 0.295 0.687 0.180 0.769 sum -5.058 0.298 -5.207 7.265 Atomic orbital electron populations 1.69785 1.09269 1.32466 1.30036 1.27004 0.95681 1.05047 0.90490 0.84997 0.78780 0.74021 0.80573 1.17854 1.18135 1.18122 1.19907 0.98775 0.91345 1.37889 0.88881 1.18282 0.92961 0.92333 0.91614 1.20851 0.99212 0.95965 1.02949 1.19697 0.87762 0.95622 0.93823 1.86538 1.40598 1.31430 1.65709 1.24404 0.89736 0.74102 0.80411 1.93057 1.91527 1.83337 1.51574 1.93056 1.69645 1.76285 1.80373 1.22083 0.97879 0.96373 1.07355 1.66144 1.09038 1.31457 1.12421 1.18411 0.91546 0.90574 1.03526 1.91349 1.50651 1.97028 1.72977 0.88453 0.84051 0.74140 0.82634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.53 10.92 21.83 0.24 -37.29 14 2 C 0.04 1.74 5.18 85.25 0.44 2.18 14 3 Si 1.00 34.23 29.59 68.60 2.03 36.26 14 4 H -0.25 -8.55 7.11 99.48 0.71 -7.84 14 5 H -0.26 -8.10 7.11 99.48 0.71 -7.40 14 6 H -0.26 -8.68 7.11 99.48 0.71 -7.98 14 7 C -0.45 -23.38 8.81 23.43 0.21 -23.17 14 8 H 0.09 4.68 7.73 -2.91 -0.02 4.66 14 9 C 0.05 2.97 5.60 -21.15 -0.12 2.85 14 10 C -0.16 -8.45 8.75 23.00 0.20 -8.25 14 11 C 0.08 3.60 6.49 22.53 0.15 3.74 14 12 O -0.33 -12.27 10.44 -92.97 -0.97 -13.24 14 13 C 0.40 10.84 5.98 113.37 0.68 11.52 14 14 F -0.21 -6.64 15.59 44.97 0.70 -5.94 14 15 F -0.21 -6.44 15.59 44.97 0.70 -5.73 14 16 C -0.08 -3.84 9.45 84.87 0.80 -3.03 14 17 N -0.48 -25.58 10.34 -194.18 -2.01 -27.59 14 18 C 0.12 6.52 8.44 85.41 0.72 7.24 14 19 F -0.14 -7.56 16.74 44.97 0.75 -6.81 14 20 H 0.30 12.61 8.30 -92.71 -0.77 11.84 14 21 H 0.14 7.26 6.20 -2.91 -0.02 7.25 14 22 H 0.24 3.01 8.14 -2.39 -0.02 2.99 14 23 H 0.16 6.76 5.08 -2.91 -0.01 6.75 14 Total: -1.00 -62.78 224.67 5.80 -56.98 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 1.28 Total: 10.27 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 3.08 Total: -6.91 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -1.77 Total: -64.88 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.97 Total: -13.24 kcal Atomic # 9 Polarization: -20.64 SS G_CDS: 2.15 Total: -18.48 kcal Atomic # 14 Polarization: 34.23 SS G_CDS: 2.03 Total: 36.26 kcal Total: -62.78 5.80 -56.98 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307354815.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.221 kcal (2) G-P(sol) polarization free energy of solvation -62.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds