Wall clock time and date at job start Mon Mar 30 2020 03:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30772 * 1 3 3 Si 1.86797 * 120.00079 * 2 1 4 4 H 1.48507 * 109.46943 * 89.99748 * 3 2 1 5 5 H 1.48495 * 109.47205 * 209.99724 * 3 2 1 6 6 H 1.48501 * 109.47184 * 330.00187 * 3 2 1 7 7 C 1.40058 * 119.99868 * 179.72166 * 2 1 3 8 8 H 1.08002 * 120.00453 * 328.98477 * 7 2 1 9 9 C 1.41126 * 119.99569 * 148.98216 * 7 2 1 10 10 C 1.41342 * 121.08843 * 326.12370 * 9 7 2 11 11 F 1.35102 * 120.55924 * 359.97398 * 10 9 7 12 12 C 1.37864 * 118.87216 * 179.73179 * 10 9 7 13 13 N 1.32064 * 121.14883 * 0.55586 * 12 10 9 14 14 C 1.31860 * 122.44265 * 359.71310 * 13 12 10 15 15 C 1.38480 * 120.97448 * 359.97438 * 14 13 12 16 16 O 1.35664 * 120.63781 * 179.97438 * 15 14 13 17 17 C 1.42893 * 116.99994 * 0.02914 * 16 15 14 18 18 F 1.39898 * 109.47184 * 299.99331 * 17 16 15 19 19 F 1.39904 * 109.47444 * 59.99619 * 17 16 15 20 20 H 0.97002 * 119.99941 * 174.88618 * 1 2 3 21 21 H 1.08004 * 119.43097 * 180.25213 * 12 10 9 22 22 H 1.08004 * 119.51222 * 180.02562 * 14 13 12 23 23 H 1.09010 * 109.47270 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 2.4892 2.0464 1.4002 5 1 3.5393 1.4401 -0.7000 6 1 1.4392 2.6527 -0.7000 7 6 2.0080 -1.2129 0.0059 8 1 1.5838 -2.0791 0.4920 9 6 3.2679 -1.3033 -0.6235 10 6 3.5561 -0.5589 -1.7899 11 9 2.6262 0.2588 -2.3302 12 6 4.8038 -0.6777 -2.3641 13 7 5.7193 -1.4783 -1.8492 14 6 5.5010 -2.1986 -0.7665 15 6 4.2829 -2.1469 -0.1098 16 8 4.0654 -2.8913 1.0033 17 6 5.1424 -3.7157 1.4530 18 9 5.4802 -4.6301 0.4495 19 9 6.2514 -2.9151 1.7468 20 1 -0.4850 -0.8367 -0.0749 21 1 5.0351 -0.1099 -3.2532 22 1 6.2840 -2.8376 -0.3858 23 1 4.8369 -4.2558 2.3492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307374258.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:39 Heat of formation + Delta-G solvation = -184.192358 kcal Electronic energy + Delta-G solvation = -16561.543745 eV Core-core repulsion = 13152.172724 eV Total energy + Delta-G solvation = -3409.371021 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.21777 -49.70904 -48.22253 -40.89746 -38.57848 -36.17978 -33.09425 -31.03638 -27.87104 -26.93522 -23.77219 -23.39732 -20.77115 -19.97063 -19.30734 -18.79530 -17.84901 -17.31923 -17.20866 -16.89074 -15.82988 -15.55503 -15.44268 -15.04428 -14.78087 -14.59877 -14.52181 -14.30938 -13.77943 -13.49456 -13.46308 -12.90775 -12.45786 -12.07510 -11.66743 -11.21906 -10.41758 -10.13190 -9.55928 -9.48366 -6.82130 0.23689 0.45073 1.37603 1.47492 1.64127 1.84210 2.12772 2.41829 2.61068 3.02530 3.54029 3.61347 3.79429 3.81510 3.99796 4.16738 4.62653 4.69613 5.05025 5.31009 5.63342 5.80025 6.01499 6.25235 6.48462 7.17987 7.72481 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.031546 B = 0.011213 C = 0.009632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.371567 B = 2496.497019 C = 2906.221900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.033 3.967 3 Si 1.094 2.906 4 H -0.275 1.275 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.521 4.521 8 H 0.073 0.927 9 C 0.058 3.942 10 C -0.069 4.069 11 F -0.141 7.141 12 C 0.083 3.917 13 N -0.530 5.530 14 C 0.043 3.957 15 C -0.040 4.040 16 O -0.322 6.322 17 C 0.401 3.599 18 F -0.213 7.213 19 F -0.211 7.211 20 H 0.289 0.711 21 H 0.176 0.824 22 H 0.159 0.841 23 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.791 -3.467 2.899 8.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.189 4.189 3 Si 0.914 3.086 4 H -0.202 1.202 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.551 4.551 8 H 0.091 0.909 9 C 0.049 3.951 10 C -0.093 4.093 11 F -0.120 7.120 12 C -0.073 4.073 13 N -0.244 5.244 14 C -0.110 4.110 15 C -0.087 4.087 16 O -0.238 6.238 17 C 0.312 3.688 18 F -0.195 7.195 19 F -0.193 7.193 20 H 0.101 0.899 21 H 0.193 0.807 22 H 0.176 0.824 23 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 7.119 -1.966 2.660 7.850 hybrid contribution -0.987 -1.888 0.199 2.140 sum 6.132 -3.854 2.859 7.787 Atomic orbital electron populations 1.70554 1.08935 1.33205 1.28534 1.28272 0.95499 1.06371 0.88735 0.83339 0.76459 0.71079 0.77743 1.20170 1.19128 1.18598 1.20306 1.01514 0.99651 1.33586 0.90932 1.17571 0.93027 0.92555 0.91903 1.18550 0.90082 1.03508 0.97130 1.91087 1.65515 1.70432 1.84994 1.22567 0.87472 0.97114 1.00168 1.67494 1.33034 1.10591 1.13294 1.22857 0.94598 0.99845 0.93691 1.19888 0.95066 1.02622 0.91094 1.86465 1.39687 1.55704 1.41982 1.24292 0.75293 0.79014 0.90202 1.93044 1.92727 1.67612 1.66098 1.93048 1.56932 1.75950 1.93383 0.89931 0.80702 0.82430 0.75140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.47 13.65 21.85 0.30 -41.17 14 2 C 0.03 1.72 4.73 85.29 0.40 2.12 14 3 Si 1.09 48.59 25.89 68.60 1.78 50.36 14 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 14 5 H -0.27 -11.91 5.34 99.48 0.53 -11.38 14 6 H -0.26 -11.05 7.11 99.48 0.71 -10.35 14 7 C -0.52 -27.95 8.93 23.42 0.21 -27.74 14 8 H 0.07 4.07 8.02 -2.91 -0.02 4.04 14 9 C 0.06 2.97 4.92 -20.97 -0.10 2.86 14 10 C -0.07 -3.33 5.16 22.94 0.12 -3.21 14 11 F -0.14 -6.79 12.95 44.97 0.58 -6.21 14 12 C 0.08 3.57 11.14 84.57 0.94 4.52 14 13 N -0.53 -23.34 10.32 -195.76 -2.02 -25.36 14 14 C 0.04 1.86 9.45 84.75 0.80 2.66 14 15 C -0.04 -1.85 6.54 23.16 0.15 -1.70 14 16 O -0.32 -12.99 9.94 -89.80 -0.89 -13.89 14 17 C 0.40 11.27 5.98 113.37 0.68 11.95 14 18 F -0.21 -6.46 15.61 44.97 0.70 -5.76 14 19 F -0.21 -6.40 15.61 44.97 0.70 -5.70 14 20 H 0.29 14.82 8.73 -92.71 -0.81 14.01 14 21 H 0.18 6.21 8.06 -2.91 -0.02 6.19 14 22 H 0.16 6.11 5.12 -2.91 -0.01 6.09 14 23 H 0.23 3.53 8.14 -2.38 -0.02 3.52 14 Total: -1.00 -60.25 218.43 5.40 -54.85 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: 1.05 Total: 1.41 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 3.20 Total: -8.54 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -1.72 Total: -66.53 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.89 Total: -13.89 kcal Atomic # 9 Polarization: -19.65 SS G_CDS: 1.99 Total: -17.66 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.78 Total: 50.36 kcal Total: -60.25 5.40 -54.85 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307374258.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.343 kcal (2) G-P(sol) polarization free energy of solvation -60.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds