Wall clock time and date at job start Mon Mar 30 2020 03:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30755 * 1 3 3 Si 1.86799 * 119.99790 * 2 1 4 4 H 1.48495 * 109.47456 * 240.00035 * 3 2 1 5 5 H 1.48509 * 109.47300 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47034 * 119.99865 * 3 2 1 7 7 C 1.40054 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00229 * 163.35010 * 7 2 1 9 9 C 1.41206 * 119.99886 * 343.35317 * 7 2 1 10 10 C 1.41096 * 121.07180 * 335.77985 * 9 7 2 11 11 C 1.36531 * 119.05293 * 179.72526 * 10 9 7 12 12 C 1.50703 * 119.32017 * 180.27896 * 11 10 9 13 13 F 1.39908 * 109.46719 * 185.28737 * 12 11 10 14 14 F 1.39901 * 109.47199 * 305.28371 * 12 11 10 15 15 F 1.39899 * 109.47144 * 65.28607 * 12 11 10 16 16 N 1.32115 * 121.35494 * 0.56577 * 11 10 9 17 17 C 1.31849 * 122.41490 * 359.71621 * 16 11 10 18 18 C 1.38625 * 120.74566 * 359.97438 * 17 16 11 19 19 O 1.35649 * 120.71538 * 180.02562 * 18 17 16 20 20 H 0.97007 * 120.00647 * 0.02562 * 1 2 3 21 21 H 1.08000 * 120.46861 * 359.97438 * 10 9 7 22 22 H 1.07998 * 119.62700 * 179.97438 * 17 16 11 23 23 H 0.96693 * 113.99452 * 275.01018 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0952 1.6965 -1.2124 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6965 1.2126 7 6 2.0079 -1.2129 -0.0005 8 1 3.0539 -1.2323 -0.2685 9 6 1.3463 -2.4103 0.3492 10 6 0.1936 -2.3945 1.1628 11 6 -0.4167 -3.5763 1.4709 12 6 -1.6520 -3.5659 2.3342 13 9 -2.0335 -4.8817 2.6180 14 9 -1.3801 -2.8911 3.5292 15 9 -2.6889 -2.9154 1.6568 16 7 0.0566 -4.7292 1.0325 17 6 1.1322 -4.8092 0.2742 18 6 1.8216 -3.6664 -0.1006 19 8 2.9279 -3.7494 -0.8812 20 1 -0.4851 0.8401 -0.0004 21 1 -0.2026 -1.4605 1.5331 22 1 1.4800 -5.7759 -0.0587 23 1 3.7438 -3.9175 -0.3903 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307428510.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:12 Heat of formation + Delta-G solvation = -175.714804 kcal Electronic energy + Delta-G solvation = -16279.756467 eV Core-core repulsion = 12870.753060 eV Total energy + Delta-G solvation = -3409.003407 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.36803 -46.90766 -46.83093 -38.99103 -36.06170 -34.44094 -30.75973 -30.14094 -26.22498 -24.99589 -22.25712 -21.11486 -18.36175 -17.75785 -17.71207 -17.26357 -16.47256 -15.74536 -14.74156 -14.30940 -13.84004 -13.78192 -13.65667 -13.32297 -13.05676 -13.03569 -12.93817 -12.37789 -12.08005 -11.72369 -11.53191 -11.39040 -10.83298 -10.42597 -10.11716 -9.61393 -8.36761 -8.27138 -7.96787 -7.13416 -4.85677 2.05448 2.50131 2.89608 2.92127 3.00746 3.42995 3.66715 4.21014 4.46863 4.90140 4.92610 5.29726 5.46120 5.77168 6.40198 6.49488 6.78350 6.84532 6.95500 7.26762 7.64105 7.96348 8.24517 8.37862 8.73716 9.07912 9.77197 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.025623 B = 0.010755 C = 0.008102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.519211 B = 2602.860441 C = 3455.263967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.072 3.928 3 Si 0.922 3.078 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.422 4.422 8 H 0.092 0.908 9 C 0.103 3.897 10 C -0.148 4.148 11 C 0.022 3.978 12 C 0.521 3.479 13 F -0.177 7.177 14 F -0.185 7.185 15 F -0.180 7.180 16 N -0.537 5.537 17 C 0.098 3.902 18 C -0.055 4.055 19 O -0.484 6.484 20 H 0.292 0.708 21 H 0.138 0.862 22 H 0.137 0.863 23 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.184 -0.325 2.719 2.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.150 4.150 3 Si 0.745 3.255 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.452 4.452 8 H 0.110 0.890 9 C 0.094 3.906 10 C -0.172 4.172 11 C -0.109 4.109 12 C 0.465 3.535 13 F -0.158 7.158 14 F -0.166 7.166 15 F -0.161 7.161 16 N -0.254 5.254 17 C -0.060 4.060 18 C -0.105 4.105 19 O -0.289 6.289 20 H 0.103 0.897 21 H 0.155 0.845 22 H 0.154 0.846 23 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.067 -0.828 2.505 2.639 hybrid contribution 0.845 1.417 0.208 1.663 sum 0.911 0.589 2.713 2.922 Atomic orbital electron populations 1.69723 1.07940 1.30778 1.31007 1.26148 0.94924 1.02221 0.91754 0.86121 0.80083 0.78901 0.80412 1.18477 1.19849 1.18362 1.19541 0.98292 0.90198 1.37197 0.89007 1.18033 0.91343 0.92712 0.88485 1.21603 0.98227 0.96987 1.00367 1.19969 0.96275 0.92301 1.02351 1.18257 0.83930 0.73085 0.78183 1.93138 1.92325 1.36412 1.93929 1.93145 1.93955 1.80785 1.48724 1.93173 1.61133 1.81745 1.80095 1.66842 1.15599 1.26481 1.16443 1.22310 0.92071 0.97072 0.94537 1.19632 0.94245 0.93173 1.03424 1.84802 1.15678 1.94258 1.34162 0.89676 0.84470 0.84565 0.78959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.56 10.93 55.55 0.61 -17.95 14 2 C 0.07 1.66 5.20 -17.33 -0.09 1.57 14 3 Si 0.92 17.09 29.59 -169.99 -5.03 12.06 14 4 H -0.26 -4.80 7.11 56.52 0.40 -4.39 14 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 14 6 H -0.26 -4.74 7.11 56.52 0.40 -4.34 14 7 C -0.42 -10.35 8.81 -37.77 -0.33 -10.69 14 8 H 0.09 2.14 7.71 -52.49 -0.40 1.73 14 9 C 0.10 2.60 5.61 -106.39 -0.60 2.00 14 10 C -0.15 -3.72 8.18 -39.11 -0.32 -4.04 14 11 C 0.02 0.53 6.23 -83.09 -0.52 0.01 14 12 C 0.52 11.33 3.30 36.01 0.12 11.45 14 13 F -0.18 -3.73 16.84 2.25 0.04 -3.69 14 14 F -0.18 -3.81 17.14 2.25 0.04 -3.77 14 15 F -0.18 -3.89 17.28 2.25 0.04 -3.85 14 16 N -0.54 -12.86 9.68 -9.71 -0.09 -12.95 14 17 C 0.10 2.18 11.15 -17.40 -0.19 1.99 14 18 C -0.06 -1.29 6.79 -38.14 -0.26 -1.55 14 19 O -0.48 -10.03 12.93 -18.65 -0.24 -10.28 14 20 H 0.29 6.33 8.30 -40.82 -0.34 5.99 14 21 H 0.14 3.49 6.22 -52.49 -0.33 3.17 14 22 H 0.14 2.60 8.06 -52.49 -0.42 2.17 14 23 H 0.36 5.57 9.06 45.56 0.41 5.98 14 LS Contribution 230.32 15.07 3.47 3.47 Total: -1.00 -27.21 230.32 -3.24 -30.45 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.13 Total: 5.77 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -2.19 Total: 0.73 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.51 Total: -30.90 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.24 Total: -10.28 kcal Atomic # 9 Polarization: -11.42 SS G_CDS: 0.12 Total: -11.31 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -27.21 -3.24 -30.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307428510.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.267 kcal (2) G-P(sol) polarization free energy of solvation -27.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds