Wall clock time and date at job start Mon Mar 30 2020 03:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86809 * 119.99736 * 2 1 4 4 H 1.48495 * 109.46848 * 239.99793 * 3 2 1 5 5 H 1.48496 * 109.47059 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46969 * 119.99762 * 3 2 1 7 7 C 1.40024 * 120.00577 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00366 * 179.97438 * 7 2 1 9 9 C 1.41284 * 119.99537 * 0.02562 * 7 2 1 10 10 N 1.33754 * 119.83482 * 0.02562 * 9 7 2 11 11 C 1.31432 * 121.66798 * 179.97438 * 10 9 7 12 12 C 1.38668 * 121.15343 * 359.74588 * 11 10 9 13 13 C 1.39271 * 119.53911 * 0.48199 * 12 11 10 14 14 O 1.35819 * 120.76782 * 179.79512 * 13 12 11 15 15 C 1.42903 * 117.00247 * 359.72872 * 14 13 12 16 16 F 1.39904 * 109.46926 * 59.99388 * 15 14 13 17 17 F 1.39901 * 109.46899 * 299.99932 * 15 14 13 18 18 C 1.39181 * 118.46111 * 359.53306 * 13 12 11 19 19 F 1.35102 * 120.57606 * 180.27122 * 18 13 12 20 20 H 0.97003 * 120.00204 * 0.02562 * 1 2 3 21 21 H 1.08004 * 119.42173 * 180.02562 * 11 10 9 22 22 H 1.08001 * 120.23333 * 180.26977 * 12 11 10 23 23 H 1.09002 * 109.47382 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6179 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2765 2.7465 0.0006 6 1 3.0952 1.6966 1.2126 7 6 2.0078 -1.2126 0.0005 8 1 3.0877 -1.2125 0.0001 9 6 1.3014 -2.4361 0.0005 10 7 -0.0362 -2.4323 -0.0005 11 6 -0.7294 -3.5490 -0.0010 12 6 -0.0995 -4.7843 -0.0058 13 6 1.2918 -4.8457 0.0001 14 8 1.9345 -6.0422 -0.0002 15 6 1.1199 -7.2163 -0.0008 16 9 0.3123 -7.2230 -1.1432 17 9 0.3120 -7.2238 1.1414 18 6 2.0084 -3.6525 0.0007 19 9 3.3594 -3.6622 0.0008 20 1 -0.4850 0.8401 -0.0004 21 1 -1.8085 -3.5035 -0.0023 22 1 -0.6838 -5.6926 -0.0106 23 1 1.7570 -8.1007 -0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307432333.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:42 Heat of formation + Delta-G solvation = -161.389488 kcal Electronic energy + Delta-G solvation = -16205.851081 eV Core-core repulsion = 12797.468866 eV Total energy + Delta-G solvation = -3408.382214 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.040 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.94026 -47.28222 -46.95672 -38.85616 -37.10286 -33.71936 -30.06511 -29.72920 -26.29504 -25.38369 -21.91860 -21.68433 -18.83950 -17.87604 -17.53098 -17.03779 -16.00290 -15.46983 -15.25208 -14.59888 -14.55786 -13.81147 -13.51094 -13.34296 -13.07689 -12.96030 -12.74653 -12.08525 -11.84965 -11.77860 -11.49232 -11.16773 -10.99742 -10.64378 -10.03945 -9.48820 -7.95306 -7.90596 -7.63166 -6.64342 -4.74824 2.48594 2.61243 3.00651 3.02667 3.08832 3.10040 3.79610 3.84943 4.52553 4.64591 4.98459 5.55382 5.58328 5.86332 6.05988 6.28475 6.78726 6.94848 7.03077 7.14899 7.28994 7.86852 8.03252 8.41806 8.63502 9.81455 10.07727 Molecular weight = 233.04amu Principal moments of inertia in cm(-1) A = 0.050996 B = 0.007664 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.933295 B = 3652.791142 C = 4027.229155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.065 3.935 3 Si 0.917 3.083 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.406 4.406 8 H 0.093 0.907 9 C 0.251 3.749 10 N -0.477 5.477 11 C 0.152 3.848 12 C -0.364 4.364 13 C 0.129 3.871 14 O -0.323 6.323 15 C 0.414 3.586 16 F -0.202 7.202 17 F -0.202 7.202 18 C -0.091 4.091 19 F -0.151 7.151 20 H 0.279 0.721 21 H 0.132 0.868 22 H 0.115 0.885 23 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.650 -6.972 -0.002 7.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.162 4.162 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.436 4.436 8 H 0.111 0.889 9 C 0.127 3.873 10 N -0.191 5.191 11 C -0.016 4.016 12 C -0.389 4.389 13 C 0.080 3.920 14 O -0.241 6.241 15 C 0.323 3.677 16 F -0.184 7.184 17 F -0.184 7.184 18 C -0.115 4.115 19 F -0.131 7.131 20 H 0.090 0.910 21 H 0.149 0.851 22 H 0.133 0.867 23 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.282 -6.032 -0.002 6.038 hybrid contribution 0.586 -0.417 0.000 0.719 sum 0.868 -6.448 -0.002 6.506 Atomic orbital electron populations 1.70116 1.07364 1.28668 1.25986 1.26136 0.95047 1.01469 0.93539 0.86214 0.80032 0.79435 0.80294 1.18582 1.19910 1.18584 1.19667 0.94978 0.88976 1.39959 0.88871 1.18538 0.88462 0.89940 0.90402 1.68858 1.05502 1.26356 1.18409 1.22425 0.99259 0.87649 0.92273 1.21509 0.91366 1.00341 1.25645 1.18934 0.91842 0.82067 0.99175 1.86531 1.35618 1.13002 1.88910 1.23153 0.81405 0.91231 0.71899 1.93072 1.76320 1.96829 1.52183 1.93072 1.76307 1.96828 1.52194 1.18136 0.76823 0.91896 1.24688 1.91269 1.29027 1.97145 1.95623 0.90966 0.85070 0.86707 0.81319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.01 11.46 55.55 0.64 -17.37 14 2 C 0.07 1.63 5.50 -17.34 -0.10 1.53 14 3 Si 0.92 18.09 29.56 -169.99 -5.02 13.07 14 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 14 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 14 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 14 7 C -0.41 -10.90 8.99 -37.76 -0.34 -11.24 14 8 H 0.09 2.39 7.42 -52.49 -0.39 2.00 14 9 C 0.25 6.99 6.56 -84.94 -0.56 6.43 14 10 N -0.48 -13.02 7.86 -11.13 -0.09 -13.11 14 11 C 0.15 3.64 11.17 -17.56 -0.20 3.44 14 12 C -0.36 -8.39 8.35 -39.04 -0.33 -8.72 14 13 C 0.13 3.11 6.52 -38.85 -0.25 2.86 14 14 O -0.32 -6.65 10.35 -19.17 -0.20 -6.85 14 15 C 0.41 6.34 5.98 101.05 0.60 6.94 14 16 F -0.20 -3.36 15.61 2.25 0.04 -3.32 14 17 F -0.20 -3.36 15.64 2.25 0.04 -3.32 14 18 C -0.09 -2.42 7.35 -38.30 -0.28 -2.71 14 19 F -0.15 -3.93 16.46 2.25 0.04 -3.89 14 20 H 0.28 6.41 8.29 -40.82 -0.34 6.07 14 21 H 0.13 2.72 8.06 -52.48 -0.42 2.29 14 22 H 0.12 2.40 5.25 -52.49 -0.28 2.12 14 23 H 0.17 1.56 8.14 -51.93 -0.42 1.14 14 LS Contribution 225.84 15.07 3.40 3.40 Total: -1.00 -30.18 225.84 -3.25 -33.43 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -0.64 Total: -0.56 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.44 Total: -1.47 kcal Atomic # 7 Polarization: -31.03 SS G_CDS: 0.55 Total: -30.48 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.20 Total: -6.85 kcal Atomic # 9 Polarization: -10.65 SS G_CDS: 0.11 Total: -10.54 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.02 Total: 13.07 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -30.18 -3.25 -33.43 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307432333.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.956 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds